From 598c8bc21abe41f6da5244676def686096a4ff7f Mon Sep 17 00:00:00 2001
From: Andrew Kiss <31054815+aekiss@users.noreply.github.com>
Date: Wed, 6 Dec 2017 09:49:21 +1100
Subject: [PATCH] somewhat safer synch (issue
 https://github.com/OceansAus/access-om2/issues/59)

---
 sync_output_to_gdata.sh   | 5 +++--
 sync_restarts_to_gdata.sh | 4 ++--
 2 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/sync_output_to_gdata.sh b/sync_output_to_gdata.sh
index b016241..5ef021e 100755
--- a/sync_output_to_gdata.sh
+++ b/sync_output_to_gdata.sh
@@ -7,9 +7,10 @@
 #PBS -N sync_output_to_gdata
 
 # Set this directory to something in /g/data3/hh5/tmp/cosima/
-# (make a unique path for your set of runs)
+# Make a unique path for your set of runs.
+# DOUBLE-CHECK IT IS UNIQUE SO YOU DON'T OVERWRITE EXISTING OUTPUT!
 GDATADIR=/ERROR/SET/GDATADIR/IN/sync_output_to_gdata.sh
 
 mkdir -p ${GDATADIR}
 cd archive
-rsync --exclude "*.nc.*" -av --safe-links --no-g output* ${GDATADIR}
+rsync --ignore-existing --exclude "*.nc.*" -av --safe-links --no-g output* ${GDATADIR}
diff --git a/sync_restarts_to_gdata.sh b/sync_restarts_to_gdata.sh
index 614c348..d6e2914 100755
--- a/sync_restarts_to_gdata.sh
+++ b/sync_restarts_to_gdata.sh
@@ -8,5 +8,5 @@
 
 source sync_output_to_gdata.sh # to define GDATADIR and cd archive
 
-# rsync -av --safe-links --no-g restart??[05]* ${GDATADIR}
-rsync -av --safe-links --no-g restart* ${GDATADIR}
+# rsync --ignore-existing -av --safe-links --no-g restart??[05]* ${GDATADIR}
+rsync --ignore-existing -av --safe-links --no-g restart* ${GDATADIR}