diff --git a/accessom2.nml b/accessom2.nml index ff41df1e..8760fadc 100644 --- a/accessom2.nml +++ b/accessom2.nml @@ -16,5 +16,5 @@ ! Runtime for a single segment/job/submit, format is years, months, seconds, ! two of which must be zero. - restart_period = 5, 0, 0 + restart_period = 1, 0, 0 &end diff --git a/config.yaml b/config.yaml index b4130fc0..947d7540 100644 --- a/config.yaml +++ b/config.yaml @@ -9,10 +9,12 @@ # shortpath: /scratch/v45 queue: normal -walltime: 3:00:00 +walltime: 1:00:00 jobname: 1deg_jra55_iaf mem: 1000GB - +storage: + gdata: + - v45 # Model configuration name: common model: access-om2 @@ -38,14 +40,18 @@ submodels: - name: ocean model: mom - exe: /g/data/ik11/inputs/access-om2/bin/fms_ACCESS-OM-BGC_af3a94d_libaccessom2_44e8821.x - input: /g/data/ik11/inputs/access-om2/input_20201102/mom_1deg + exe: /home/581/hh0162/scratch/access-om2-iamip2/bin/fms_ACCESS-OM-BGC_09931a0_libaccessom2_44e8821-modified.x + input: + - /g/data/v45/hh0162/projects/icebgc/prep_omip2/input_om2-bgc/1deg + - /g/data/ik11/inputs/access-om2/input_20201102/mom_1deg ncpus: 216 - name: ice model: cice5 - exe: /g/data/ik11/inputs/access-om2/bin/cice_auscom_360x300_24p_dfb833a_libaccessom2_44e8821.exe - input: /g/data/ik11/inputs/access-om2/input_20201102/cice_1deg + exe: /home/581/hh0162/scratch/access-om2-iamip2/bin/cice_auscom_360x300_24p_30ba0cc-modified_libaccessom2_44e8821-modified.exe + input: + - /g/data/v45/hh0162/projects/icebgc/prep_omip2/input_om2-bgc/1deg + - /g/data/ik11/inputs/access-om2/input_20201102/cice_1deg ncpus: 24 # Collation diff --git a/ice/cice_in.nml b/ice/cice_in.nml index bb6c4a7a..06a6b3f1 100644 --- a/ice/cice_in.nml +++ b/ice/cice_in.nml @@ -141,7 +141,7 @@ restart_hbrine = .false. restore_bgc = .false. sil_data_type = 'default' - skl_bgc = .false. + skl_bgc = .true. tr_bgc_am_sk = .false. tr_bgc_c_sk = .false. tr_bgc_chl_sk = .false. @@ -150,6 +150,7 @@ tr_bgc_dmspp_sk = .false. tr_bgc_sil_sk = .false. tr_brine = .false. + dz_ocean1 = 2.3035 / &forcing_nml @@ -337,16 +338,16 @@ f_bgc_dmsp_ml = 'x' f_bgc_dmspd_sk = 'x' f_bgc_dmspp_sk = 'x' - f_bgc_n_sk = 'x' - f_bgc_nit_ml = 'x' - f_bgc_nit_sk = 'x' + f_bgc_n_sk = 'm' + f_bgc_nit_ml = 'm' + f_bgc_nit_sk = 'm' f_bgc_sil_ml = 'x' f_bgc_sil_sk = 'x' f_bphi = 'x' f_btin = 'x' f_faero_atm = 'x' f_faero_ocn = 'x' - f_fbri = 'x' + f_fbri = 'm' f_fn = 'x' f_fn_ai = 'x' f_fnh = 'x' @@ -356,8 +357,8 @@ f_fsil = 'x' f_fsil_ai = 'x' f_grownet = 'x' - f_hbri = 'x' - f_ppnet = 'x' + f_hbri = 'm' + f_ppnet = 'm' / &icefields_drag_nml diff --git a/ice/input_ice.nml b/ice/input_ice.nml index d77f9187..35767cd7 100644 --- a/ice/input_ice.nml +++ b/ice/input_ice.nml @@ -10,11 +10,11 @@ 'runof_i', 'tair_i', 'qair_i', 'uwnd_i', 'vwnd_i', 'licalvf_i' fields_from_ocn = 'sst_i', 'sss_i', 'ssu_i', 'ssv_i', 'sslx_i', 'ssly_i', - 'pfmice_i' + 'pfmice_i', 'ssn_i', 'ssalg_i' fields_to_ocn = 'strsu_io', 'strsv_io', 'rain_io', 'snow_io', 'stflx_io', 'htflx_io', 'swflx_io', 'qflux_io', 'shflx_io', 'lwflx_io', 'runof_io', 'press_io', 'aice_io', 'melt_io', - 'form_io', 'licefw_io', 'licefh_io' + 'form_io', 'licefw_io', 'licefh_io', 'wnd10_io', 'nit_io', 'alg_io' gfdl_surface_flux = .true. ice_fwflux = .true. ice_pressure_on = .true. diff --git a/manifests/exe.yaml b/manifests/exe.yaml index b560c5d3..bc316bdd 100644 --- a/manifests/exe.yaml +++ b/manifests/exe.yaml @@ -6,13 +6,13 @@ work/atmosphere/yatm_44e8821.exe: hashes: binhash: c34913cd8082c0e45124f648197ad8e1 md5: cdcd9dd20f690bb874cdf392085857cf -work/ice/cice_auscom_360x300_24p_16fcc6d_libaccessom2_44e8821.exe: - fullpath: /g/data/ik11/inputs/access-om2/bin/cice_auscom_360x300_24p_16fcc6d_libaccessom2_44e8821.exe +work/ice/cice_auscom_360x300_24p_30ba0cc-modified_libaccessom2_44e8821-modified.exe: + fullpath: /home/581/hh0162/scratch/access-om2-iamip2/bin/cice_auscom_360x300_24p_30ba0cc-modified_libaccessom2_44e8821-modified.exe hashes: - binhash: 1ad702212bad17e13b63b82892efa9f5 - md5: f26186f285a91cca933f6123525de172 -work/ocean/fms_ACCESS-OM-BGC_af3a94d_libaccessom2_44e8821.x: - fullpath: /g/data/ik11/inputs/access-om2/bin/fms_ACCESS-OM-BGC_af3a94d_libaccessom2_44e8821.x + binhash: 83d14294051ff90aceb4e175b72bcd32 + md5: 9f05fd65329a8f611727ad2a781575e3 +work/ocean/fms_ACCESS-OM-BGC_09931a0_libaccessom2_44e8821-modified.x: + fullpath: /home/581/hh0162/scratch/access-om2-iamip2/bin/fms_ACCESS-OM-BGC_09931a0_libaccessom2_44e8821-modified.x hashes: - binhash: 5bfc6828685f392eeb74a457f07498dd - md5: cc91484411d0d34e371bf4807652b4da + binhash: 8720b8c6e0ece3d70904bc9bee67e5b6 + md5: 222d62240c3670ccd14218f99203c645 diff --git a/manifests/input.yaml b/manifests/input.yaml index cd059b1c..bf51b51d 100644 --- a/manifests/input.yaml +++ b/manifests/input.yaml @@ -3441,57 +3441,71 @@ work/atmosphere/INPUT/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-4-0_gr hashes: binhash: 987ff85784eff1316d6929f631fe1426 md5: b0e514bfac0d9dfbf538d36b8ecd17f9 -work/ice/RESTART/grid.nc: - copy: true - fullpath: /g/data/ik11/inputs/access-om2/input_20201102/cice_1deg/grid.nc - hashes: - binhash: e7108317ae28b1f9ae77711728925cb6 - md5: 1213e346055ee073fe33dc12578d99c6 -work/ice/RESTART/i2o.nc: - copy: true - fullpath: /g/data/ik11/inputs/access-om2/input_20201102/cice_1deg/i2o.nc - hashes: - binhash: 527d494c80b2a3418645b962fd8706d0 - md5: c96e06c3c80c0f680545db59ed3349e5 -work/ice/RESTART/kmt.nc: - copy: true - fullpath: /g/data/ik11/inputs/access-om2/input_20201102/cice_1deg/kmt.nc - hashes: - binhash: 13a23d6d9331abc9d677c6fd466a4433 - md5: 1f9806c646a620378e5257e480bc9df7 -work/ice/RESTART/monthly_sstsss.nc: - copy: true - fullpath: /g/data/ik11/inputs/access-om2/input_20201102/cice_1deg/monthly_sstsss.nc - hashes: - binhash: 66f44d84fada351d4ebf05f196762d8c - md5: 323d4c605f83f4d7d3126da70153c2ed -work/ice/RESTART/o2i.nc: - copy: true - fullpath: /g/data/ik11/inputs/access-om2/input_20201102/cice_1deg/o2i.nc - hashes: - binhash: 56f258e931a8eda2fc42b3a315d485eb - md5: 3498246dcd7da40d3b8c6b4a908b260f -work/ice/RESTART/u_star.nc: - copy: true - fullpath: /g/data/ik11/inputs/access-om2/input_20201102/cice_1deg/u_star.nc - hashes: - binhash: f93a19930c5c59e03751e70a123ab01f - md5: 68cf0ef92576f96ef085cd7f243d0c39 +work/ocean/INPUT/bgc_param.nc: + fullpath: /g/data/v45/hh0162/projects/icebgc/prep_omip2/input_iamip2/bgc_param.nc + hashes: + binhash: 01dd023f892345a339a75c0f8def735e + md5: 9f55f5b4cb38960f394044eb6e2157dc +work/ocean/INPUT/cfc_auscom.nc: + fullpath: /g/data/v45/hh0162/projects/icebgc/prep_omip2/input_iamip2/cfc_auscom.nc + hashes: + binhash: 0ef60fbcc83af2d6d33680b105527e0c + md5: 38660c8a5de3e3b63d2ae7ba5020d515 work/ocean/INPUT/chl.nc: fullpath: /g/data/ik11/inputs/access-om2/input_20201102/mom_1deg/chl.nc hashes: binhash: 05b3313121bbb9825a20f0fb58901b21 md5: a7aa5bcf4a3b9fa8102edd3b6b67c3a2 +work/ocean/INPUT/co2_obs.nc: + fullpath: /g/data/v45/hh0162/projects/icebgc/prep_omip2/input_iamip2/co2_obs.nc + hashes: + binhash: 0d42b3a70c19093494e3b20796f6a6fc + md5: 9958ce02abada0533a964b071dd3c26a +work/ocean/INPUT/co2_obs_iamip2_con.nc: + fullpath: /g/data/v45/hh0162/projects/icebgc/prep_omip2/input_iamip2/co2_obs_iamip2_con.nc + hashes: + binhash: 2e99cdc6d56091658c5e20fb2a993364 + md5: 6a3f17f1a034b777ac373266d5610789 +work/ocean/INPUT/co2_obs_omip2_1-3.nc: + fullpath: /g/data/v45/hh0162/projects/icebgc/prep_omip2/input_iamip2/co2_obs_omip2_1-3.nc + hashes: + binhash: a8cb6e3f4eb74200c1899c3f4fe7ff93 + md5: a956460457c79590f018cad4efa4de3f +work/ocean/INPUT/csiro_bgc.res.nc: + fullpath: /g/data/v45/hh0162/projects/icebgc/prep_omip2/input_iamip2/csiro_bgc.res.nc + hashes: + binhash: 4fc8b93f2d71ebafbd95b3ee8677d5f4 + md5: a65da5e0413aa774c62cf596e8bd7271 +work/ocean/INPUT/csiro_bgc_sediment.res.nc: + fullpath: /g/data/v45/hh0162/projects/icebgc/prep_omip2/input_iamip2/csiro_bgc_sediment.res.nc + hashes: + binhash: 4bf4ff2cfc52f2d3fec82e2d770bfc18 + md5: 47d3157c3fe17c8e3581350295c1413c +work/ocean/INPUT/dust_om2.nc: + fullpath: /g/data/v45/hh0162/projects/icebgc/prep_omip2/input_iamip2/dust_om2.nc + hashes: + binhash: 7eb54e681b58ba9c484e9913d57337df + md5: e16438a05c180e8709d21ff880192b03 work/ocean/INPUT/grid_spec.nc: fullpath: /g/data/ik11/inputs/access-om2/input_20201102/mom_1deg/grid_spec.nc hashes: binhash: 587ca8eb0cbc978232fe55a7bff054c9 md5: 027d2f8fb1eda3ef1cf0a3f520a217f7 +work/ocean/INPUT/i2o.nc: + fullpath: /g/data/v45/hh0162/projects/icebgc/prep_omip2/input_iamip2/i2o.nc + hashes: + binhash: a3026b03b45556cb5a9ce4ae34603ffb + md5: 273fb9d25a2b9a7e4cbf158e3aea1e50 work/ocean/INPUT/mask_table.24.16x15: fullpath: /g/data/ik11/inputs/access-om2/input_20201102/mom_1deg/mask_table.24.16x15 hashes: binhash: 77b929b930cd4fca59f185b3222dde49 md5: 2203b38758fb2b56a145ef16b7872af9 +work/ocean/INPUT/o2i.nc: + fullpath: /g/data/v45/hh0162/projects/icebgc/prep_omip2/input_iamip2/o2i.nc + hashes: + binhash: 11778d8b29e044047dd34b50922d9a21 + md5: 0ce344f73b224f0809f31357fcdeba98 work/ocean/INPUT/ocean_hgrid.nc: fullpath: /g/data/ik11/inputs/access-om2/input_20201102/mom_1deg/ocean_hgrid.nc hashes: @@ -3522,6 +3536,26 @@ work/ocean/INPUT/ocean_vgrid.nc: hashes: binhash: cd9ef67b8cf6d4ea0c78554ac38e1bc3 md5: 339ff716e3019a86fc861498e674250a +work/ocean/INPUT/ocmip2_fice_monthly_om1p5_bc.nc: + fullpath: /g/data/v45/hh0162/projects/icebgc/prep_omip2/input_iamip2/ocmip2_fice_monthly_om1p5_bc.nc + hashes: + binhash: dca033091346f730c32d5357361ccee8 + md5: c0ed75eef44962dbe6fc9f61dbd228a9 +work/ocean/INPUT/ocmip2_press_monthly_om2.nc: + fullpath: /g/data/v45/hh0162/projects/icebgc/prep_omip2/input_iamip2/ocmip2_press_monthly_om2.nc + hashes: + binhash: 814653bfaa6fad936ced1d862e8d6287 + md5: fd7f6e66d09d9f6f87732290f0131b9d +work/ocean/INPUT/ocmip2_xkw_monthly_om1p5_bc.nc: + fullpath: /g/data/v45/hh0162/projects/icebgc/prep_omip2/input_iamip2/ocmip2_xkw_monthly_om1p5_bc.nc + hashes: + binhash: 4592909e34c061a9e6aa3886c3d24609 + md5: 348a035bed83e280bb0a1de0066947fc +work/ocean/INPUT/ocmip2_xkw_monthly_om2.nc: + fullpath: /g/data/v45/hh0162/projects/icebgc/prep_omip2/input_iamip2/ocmip2_xkw_monthly_om2.nc + hashes: + binhash: 65728d3d89b4347544961058eb5c69c1 + md5: fd87b17f01689105414865748f97b41b work/ocean/INPUT/roughness_amp.nc: fullpath: /g/data/ik11/inputs/access-om2/input_20201102/mom_1deg/roughness_amp.nc hashes: diff --git a/manifests/restart.yaml b/manifests/restart.yaml index f1e1197c..8aec7ac2 100644 --- a/manifests/restart.yaml +++ b/manifests/restart.yaml @@ -1,3 +1,1104 @@ format: yamanifest version: 1.0 ---- {} +--- +work/accessom2_restart.nml: + fullpath: /scratch/v45/hh0162/access-om2/archive/1deg_jra55_iaf_master/restart000/accessom2_restart.nml + hashes: + binhash: f1446468a1b885b4386d559a9bda4cd6 + md5: 366c7be36149646047b4a60b9ea7c092 +work/ice/RESTART/bgc_param.nc: + copy: true + fullpath: /scratch/v45/hh0162/access-om2/archive/1deg_jra55_iaf_master/restart000/ice/bgc_param.nc + hashes: + binhash: c883470db4a6b4ddd901532e2000272e + md5: 9f55f5b4cb38960f394044eb6e2157dc +work/ice/RESTART/cfc_auscom.nc: + copy: true + fullpath: /scratch/v45/hh0162/access-om2/archive/1deg_jra55_iaf_master/restart000/ice/cfc_auscom.nc + hashes: + binhash: 02b962438d45879f2cc7a171540425ab + md5: 38660c8a5de3e3b63d2ae7ba5020d515 +work/ice/RESTART/co2_obs.nc: + copy: true + fullpath: /scratch/v45/hh0162/access-om2/archive/1deg_jra55_iaf_master/restart000/ice/co2_obs.nc + hashes: + binhash: d9463578f7f7983b4da1f41964baf33f + md5: 9958ce02abada0533a964b071dd3c26a +work/ice/RESTART/co2_obs_iamip2_con.nc: + copy: true + fullpath: /scratch/v45/hh0162/access-om2/archive/1deg_jra55_iaf_master/restart000/ice/co2_obs_iamip2_con.nc + hashes: + binhash: 40a5a27b2335788a030bd7641f2b8dd2 + md5: 6a3f17f1a034b777ac373266d5610789 +work/ice/RESTART/co2_obs_omip2_1-3.nc: + copy: true + fullpath: /scratch/v45/hh0162/access-om2/archive/1deg_jra55_iaf_master/restart000/ice/co2_obs_omip2_1-3.nc + hashes: + binhash: 6a8af56037a5d3228d67ceba05668a58 + md5: a956460457c79590f018cad4efa4de3f +work/ice/RESTART/csiro_bgc.res.nc: + copy: true + fullpath: /scratch/v45/hh0162/access-om2/archive/1deg_jra55_iaf_master/restart000/ice/csiro_bgc.res.nc + hashes: + binhash: 6e48ad6068ad0c78fed52e6e9e19f0fb + md5: a65da5e0413aa774c62cf596e8bd7271 +work/ice/RESTART/csiro_bgc_sediment.res.nc: + copy: true + fullpath: /scratch/v45/hh0162/access-om2/archive/1deg_jra55_iaf_master/restart000/ice/csiro_bgc_sediment.res.nc + hashes: + binhash: 55972da63da03d2cfe92d5fc7b5c47e8 + md5: 47d3157c3fe17c8e3581350295c1413c +work/ice/RESTART/dust_om2.nc: + copy: true + fullpath: /scratch/v45/hh0162/access-om2/archive/1deg_jra55_iaf_master/restart000/ice/dust_om2.nc + hashes: + binhash: 81353248ba8fdbdb9c29d4fae9292061 + md5: e16438a05c180e8709d21ff880192b03 +work/ice/RESTART/grid.nc: + copy: true + fullpath: /scratch/v45/hh0162/access-om2/archive/1deg_jra55_iaf_master/restart000/ice/grid.nc + hashes: + binhash: a09797eeac18d5fb636aa06a080fea3f + md5: 1213e346055ee073fe33dc12578d99c6 +work/ice/RESTART/i2o.nc: + copy: true + fullpath: /scratch/v45/hh0162/access-om2/archive/1deg_jra55_iaf_master/restart000/ice/i2o.nc + hashes: + binhash: 9f3a1fcb0667963c77b7d71fa6ae7017 + md5: 006236a5bc4bb8f98200fb9a1f3ba0e0 +work/ice/RESTART/ice.restart_file: + copy: true + fullpath: /scratch/v45/hh0162/access-om2/archive/1deg_jra55_iaf_master/restart000/ice/ice.restart_file + hashes: + binhash: cd79d0062fccdfc3bd641ec265306d0a + md5: 1ff0a273f07288788d4ff3a208f91470 +work/ice/RESTART/iced.1958-02-01-00000.nc: + copy: true + fullpath: /scratch/v45/hh0162/access-om2/archive/1deg_jra55_iaf_master/restart000/ice/iced.1958-02-01-00000.nc + hashes: + binhash: 2966db79ecc1ac909c00b816a288cf0e + md5: 64c53721a21ff41dd2d4b4a0d7f83473 +work/ice/RESTART/kmt.nc: + copy: true + fullpath: /scratch/v45/hh0162/access-om2/archive/1deg_jra55_iaf_master/restart000/ice/kmt.nc + hashes: + binhash: 9797e9a33c45e8e4de3827de52390991 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/scratch/v45/hh0162/access-om2/archive/1deg_jra55_iaf_master/restart000/ocean/ocean_velocity_advection.res.nc.0009 + hashes: + binhash: 4c85084144c26c7389b414b5165feabf + md5: ec8bd480acc88cb004e1389bcd41af71 +work/ocean/INPUT/ocean_velocity_advection.res.nc.0010: + fullpath: /scratch/v45/hh0162/access-om2/archive/1deg_jra55_iaf_master/restart000/ocean/ocean_velocity_advection.res.nc.0010 + hashes: + binhash: ca955165d6192db4078bc1dcd5626cb4 + md5: b3a9f76c576ddfcecc4140cdf324ffda +work/ocean/INPUT/ocean_velocity_advection.res.nc.0011: + fullpath: /scratch/v45/hh0162/access-om2/archive/1deg_jra55_iaf_master/restart000/ocean/ocean_velocity_advection.res.nc.0011 + hashes: + binhash: 6eb04a46f18ccfe7fae7f0f5d7a696ab + md5: 2aa33fd5d8d669ba72d91ad59d9c09e5 diff --git a/namcouple b/namcouple index 2a44983a..3847404b 100644 --- a/namcouple +++ b/namcouple @@ -16,7 +16,7 @@ ### 11 fields atm -> ice ### 17 fields ice -> ocn ### 7 fields ocn -> ice - 35 + 40 $END ######################################################################### # $JOBNAME @@ -265,6 +265,21 @@ NA NA ########## licefh_io liceht -1 -1 0 i2o.nc IGNORED NA NA +########## +# Field 29 : 10 m winds +########## +wnd10_io wnd_io -1 -1 0 i2o.nc IGNORED +NA NA +########## +# Field 30 : sea surface nitrate [mmol m-3] +########## +nit_io iof_nit -1 -1 0 i2o.nc IGNORED +NA NA +########## +# Field 31 : sea surface algae/phyto in nitrogen [mmol m-3] +########## +alg_io iof_alg -1 -1 0 i2o.nc IGNORED +NA NA ############################################################################ # # OCEAN --->>> ICE @@ -303,5 +318,15 @@ NA NA # Field 35 : sea surface slope _y_ (m/m) ########## dssldy ssly_i -1 -1 0 o2i.nc IGNORED +NA NA +########## +# Field 36 : sea surface nitrate (mmol/m^3) +########## +n_surf ssn_i -1 -1 0 o2i.nc IGNORED +NA NA +########## +# Field 37 : sea surface algae/phytoplankton in nitrogen (mmol/m^3) +########## +alg_surf ssalg_i -1 -1 0 o2i.nc IGNORED NA NA $END diff --git a/ocean/diag_table_bgc b/ocean/diag_table_bgc new file mode 100755 index 00000000..2aa63001 --- /dev/null +++ b/ocean/diag_table_bgc @@ -0,0 +1,79 @@ + +# bgc output will be saved according to temporal frequency (annual, monthly, daily) +"ocean_ann", 12, "months", 1, "days", "time", +"ocean_month", 1, "months", 1, "days", "time", +"ocean_daily", 1, "days", 1, "days", "time", + +#bgc fields table format +#0: "ocean_model" (do not change) +#1: name of wombat variable +#2: name of access variable (or any name you wish to output as. For cmip6 data submission, see master_map.csv or contact Chloe Mackallah) +#3: name of file (for cmip6 data submission, see dreq_mapping.py or contact Chloe Mackallah) +#4: "all" (do not change) +#5: .true. (do not change) +#6: "none" (do not change) +#7: 2 (do not change) + +# List of all available bgc diagnostics saved as annual means + +#prognostic 3d fields + +"ocean_model","adic","adic", "ocean_ann","all",.true.,"none",2 +"ocean_model","dic","dic", "ocean_ann","all",.true.,"none",2 +"ocean_model","alk","alk", "ocean_ann","all",.true.,"none",2 +"ocean_model","o2","o2", "ocean_ann","all",.true.,"none",2 +"ocean_model","no3","no3", "ocean_ann","all",.true.,"none",2 +"ocean_model","fe","fe", "ocean_ann","all",.true.,"none",2 +"ocean_model","phy","phy", "ocean_ann","all",.true.,"none",2 +"ocean_model","zoo","zoo", "ocean_ann","all",.true.,"none",2 +"ocean_model","det","det", "ocean_ann","all",.true.,"none",2 +"ocean_model","caco3","caco3", "ocean_ann","all",.true.,"none",2 + +#diagnostic fields + +"ocean_model","stf09","stf09", "ocean_ann","all",.true.,"none",2 +"ocean_model","stf07","stf07", "ocean_ann","all",.true.,"none",2 +"ocean_model","stf03","stf03", "ocean_ann","all",.true.,"none",2 +"ocean_model","paco2","paco2", "ocean_ann","all",.true.,"none",2 +"ocean_model","pco2","pco2", "ocean_ann","all",.true.,"none",2 +"ocean_model","npp1","npp1", "ocean_ann","all",.true.,"none",2 +"ocean_model","npp2d","npp2d", "ocean_ann","all",.true.,"none",2 +"ocean_model","npp3d","npp3d", "ocean_ann","all",.true.,"none",2 +"ocean_model","pprod_gross","pprod_gross", "ocean_ann","all",.true.,"none",2 +"ocean_model","pprod_gross_2d","pprod_gross_2d", "ocean_ann","all",.true.,"none",2 +"ocean_model","zprod_gross","zprod_gross", "ocean_ann","all",.true.,"none",2 +"ocean_model","light_limit","light_limit", "ocean_ann","all",.true.,"none",2 +"ocean_model","radbio1","radbio1", "ocean_ann","all",.true.,"none",2 +"ocean_model","radbio3d","radbio3d", "ocean_ann","all",.true.,"none",2 +"ocean_model","wdet100","wdet100", "ocean_ann","all",.true.,"none",2 +"ocean_model","kw_o2","kw_o2", "ocean_ann","all",.true.,"none",2 +"ocean_model","o2_saturation","o2_saturation", "ocean_ann","all",.true.,"none",2 +"ocean_model","sc_o2","sc_o2", "ocean_ann","all",.true.,"none",2 +"ocean_model","co2_saturation","co2_saturation", "ocean_ann","all",.true.,"none",2 +"ocean_model","aco2_saturation","aco2_saturation", "ocean_ann","all",.true.,"none",2 +"ocean_model","caco3_sediment","caco3_sediment", "ocean_ann","all",.true.,"none",2 +"ocean_model","det_sediment","det_sediment", "ocean_ann","all",.true.,"none",2 +"ocean_model","caco3_sed_remin","caco3_sed_remin", "ocean_ann","all",.true.,"none",2 +"ocean_model","caco3_sed_depst","caco3_sed_depst", "ocean_ann","all",.true.,"none",2 +"ocean_model","det_sed_remin","det_sed_remin", "ocean_ann","all",.true.,"none",2 +"ocean_model","det_sed_depst","det_sed_depst", "ocean_ann","all",.true.,"none",2 +"ocean_model","total_aco2_flux","total_aco2_flux","ocean_ann","all",.true.,"none",2 +"ocean_model","total_co2_flux", "total_co2_flux", "ocean_ann","all",.true.,"none",2 + +#prognostic 2d fields (at ocean surface layer) + +"ocean_model","surface_adic","surface_adic", "ocean_ann","all",.true.,"none",2 +"ocean_model","surface_dic","surface_dic", "ocean_ann","all",.true.,"none",2 +"ocean_model","surface_alk","surface_alk", "ocean_ann","all",.true.,"none",2 +"ocean_model","surface_no3","surface_no3", "ocean_ann","all",.true.,"none",2 +"ocean_model","surface_phy","surface_phy", "ocean_ann","all",.true.,"none",2 +"ocean_model","surface_zoo","surface_zoo", "ocean_ann","all",.true.,"none",2 +"ocean_model","surface_det","surface_det", "ocean_ann","all",.true.,"none",2 +"ocean_model","surface_caco3","surface_caco3", "ocean_ann","all",.true.,"none",2 +"ocean_model","surface_o2","surface_o2", "ocean_ann","all",.true.,"none",2 +"ocean_model","surface_fe","surface_fe", "ocean_ann","all",.true.,"none",2 + +# An example of monthly and daily bgc diagnostics + +"ocean_model","surface_no3","surface_no3", "ocean_month","all",.true.,"none",2 +"ocean_model","surface_phy","surface_phy", "ocean_daily","all",.true.,"none",2 diff --git a/ocean/field_table_bgc b/ocean/field_table_bgc new file mode 100755 index 00000000..9abda2b7 --- /dev/null +++ b/ocean/field_table_bgc @@ -0,0 +1,127 @@ +"tracer_packages","ocean_mod","csiro_bgc" + +names = _ +horizontal-advection-scheme = mdfl_sweby +vertical-advection-scheme = mdfl_sweby +restart_file = csiro_bgc.res.nc +min_tracer_limit=-1e6 +max_tracer_limit=1e6 +min_range=-1e6 +max_range=1e6 +/ + +"prog_tracers","ocean_mod","adic" + +horizontal-advection-scheme = mdfl_sweby +vertical-advection-scheme = mdfl_sweby +restart_file = csiro_bgc.res.nc +longname = adic +/ + +"prog_tracers","ocean_mod","caco3" + +horizontal-advection-scheme = upwind +vertical-advection-scheme = upwind +restart_file = csiro_bgc.res.nc +longname = caco3 +/ + +"prog_tracers","ocean_mod","alk" + +horizontal-advection-scheme = mdfl_sweby +vertical-advection-scheme = mdfl_sweby +restart_file = csiro_bgc.res.nc +longname = alk +/ + +"prog_tracers","ocean_mod","dic" + +horizontal-advection-scheme = mdfl_sweby +vertical-advection-scheme = mdfl_sweby +restart_file = csiro_bgc.res.nc +longname = dic +/ + +"prog_tracers","ocean_mod","no3" + +horizontal-advection-scheme = mdfl_sweby +vertical-advection-scheme = mdfl_sweby +restart_file = csiro_bgc.res.nc +longname = no3 +/ + +"prog_tracers","ocean_mod","phy" + +horizontal-advection-scheme = mdfl_sweby +vertical-advection-scheme = mdfl_sweby +restart_file = csiro_bgc.res.nc +longname = phy +/ + +"prog_tracers","ocean_mod","o2" + +horizontal-advection-scheme = mdfl_sweby +vertical-advection-scheme = mdfl_sweby +restart_file = csiro_bgc.res.nc +longname = o2 +/ + +"prog_tracers","ocean_mod","fe" + +horizontal-advection-scheme = mdfl_sweby +vertical-advection-scheme = mdfl_sweby +restart_file = csiro_bgc.res.nc +longname = fe +/ + +"prog_tracers","ocean_mod","zoo" + +horizontal-advection-scheme = mdfl_sweby +vertical-advection-scheme = mdfl_sweby +restart_file = csiro_bgc.res.nc +longname = zoo +/ + +"prog_tracers","ocean_mod","det" + +horizontal-advection-scheme = upwind +vertical-advection-scheme = upwind +restart_file = csiro_bgc.res.nc +longname = det +/ + +"namelists","ocean_mod","csiro_bgc/_" +/ + +"namelists","ocean_mod","csiro_bgc/*global*" + +use_access_co2 = .false. +gasx_from_file = .false. +ice_file4gasx = .false. +zero_floor = .true. + +atmpress_file = INPUT/ocmip2_press_monthly_om2.nc +atmpress_name = p +pistonveloc_file = INPUT/ocmip2_xkw_monthly_om2.nc +pistonveloc_name = xkw +seaicefract_file = INPUT/ocmip2_fice_monthly_om1p5_bc.nc +seaicefract_name = fice +aco2_file = INPUT/co2_obs.nc +aco2_name = co2 +dust_file = INPUT/dust_om2.nc +dust_name = dust + +s_npp=-0.01 +bio_version = 3 +qbio_model = csiro +id_no3 = 1 +id_phy = 2 +id_o2 = 3 +id_zoo = 4 +id_det = 5 +id_caco3 = 6 +id_dic = 7 +id_alk = 8 +id_adic = 9 +id_fe = 10 +/ diff --git a/ocean/input.nml b/ocean/input.nml index a06d7e53..a5b7ac65 100644 --- a/ocean/input.nml +++ b/ocean/input.nml @@ -41,11 +41,11 @@ fields_in = 'u_flux', 'v_flux', 'lprec', 'fprec', 'salt_flx', 'mh_flux', 'sw_flux', 'q_flux', 't_flux', 'lw_flux', 'runof', 'p', 'aice', 'wfimelt', 'wfiform', 'licefw', - 'liceht' + 'liceht', 'wnd_io', 'iof_nit', 'iof_alg' fields_out = 't_surf', 's_surf', 'u_surf', 'v_surf', 'dssldx', - 'dssldy', 'frazil' - num_fields_in = 17 - num_fields_out = 7 + 'dssldy', 'frazil', 'n_surf', 'alg_surf' + num_fields_in = 20 + num_fields_out = 9 send_after_ocean_update = .true. send_before_ocean_update = .false. /