Skip to content
Permalink
master
Switch branches/tags

Name already in use

A tag already exists with the provided branch name. Many Git commands accept both tag and branch names, so creating this branch may cause unexpected behavior. Are you sure you want to create this branch?

ComputationalTools/HiCBricks.md

Go to file
 
 
Cannot retrieve contributors at this time
HiCBricks: building blocks for efficient handling of large Hi-C datasets Description How to cite
11 lines (7 sloc) 917 Bytes
Raw Blame
Open in GitHub Desktop

HiCBricks: building blocks for efficient handling of large Hi-C datasets

external link: https://github.com/koustav-pal/HiCBricks, https://www.bioconductor.org/packages/release/bioc/html/HiCBricks.html

developed by Pal K, Tagliaferri I, Livi C M, Ferrari's lab, IFOM

Description

HiCBricks offers user-friendly and efficient solutions for handling large high-resolution Hi-C datasets. HiCBricks provides functions to import data using various Hi-C data formats (mcool, sparse, square matrix, with more to come). It provides simplified functions for accessing relevant data points in Hi-C matrices. Finally, it provides functions for calling domains and other functions for high quality data visualizations.

How to cite

Pal K, Tagliaferri I, Livi CM, Ferrari F (2019). HiCBricks: building blocks for efficient handling of large Hi-C datasets. Bioinformatics, 171, 557. doi: 10.1093/bioinformatics/btz808.