external link: https://github.com/3DGenomes/TADdyn
developed by Marti-Renom Laboratory at CNAG-CGR
TADdyn, is a new tool that integrates time-course 3C data, restraint-based modelling, and molecular dynamics to simulate the structural rearrangements of genomic loci in a completely data-driven way.
Di Stefano, M., Stadhouders, R., Farabella, I., Castillo, D., Serra, F., Graf, T. and Marti-Renom, M.A. "Dynamic simulations of transcriptional control during cell reprogramming reveal spatial chromatin caging." Nature Communications (2020) in press