iSEE - The interactive SummarizedExperiment Explorer
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The iSEE package provides an interactive user interface for exploring data in objects derived from the
Particular focus is given to single-cell data stored in the
SingleCellExperiment derived class.
The user interface is implemented with RStudio's Shiny, with a multi-panel setup for ease of navigation.
This initiative was proposed at the European Bioconductor Meeting in Cambridge, 2017. Current contributors include:
The user interface of iSEE web-applications currently offers the following features:
The iSEE user interface currently contains the following components where each data point represents a single biological sample:
The iSEE user interface currently contains the following components where each data point represents a genomic feature:
The iSEE user interface contains the following components that integrate sample and feature information:
The iSEE user interface allows users to programmatically define their own plotting and table panels.
Want to try iSEE?
We set up instances of iSEE applications running on diverse types of datasets at those addresses:
Please keep in mind that those public instances are for trial purposes only;
yet they demonstrate how you or your system administrator can setup iSEE for analyzing or sharing your precomputed
If you want to extend the functionality of iSEE, you can create custom panels which add new possibilities to interact with your data. You can find a gallery with working examples of how to do it here. Feel free to contact the developing team, should you need some clarifications on how iSEE works internally. Submit a pull request once the implementation is complete, if you want to have it added to the gallery.