Nagarajan Lab

LoFreq Star: Sensitive variant calling from sequencing data

A pipeline for primary analysis of shotgun metagenomic sequencing data

OPERA-MS

Decontaminate FastQ files

github pages for csb5

INC-Seq: Accurate single molecule reads using nanopore sequencing

Scripts to analyze data from the SPLASH protocol for generating in vivo RNA interactome maps

Robust, Computational Identification of Influenza Reassortments via Graph Mining

Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences

Viral Pipeline Runner Version 2

Supplementary Data for Do et al. (2015)

Cancer-omics Data Integration

SVM/regex abstract parser for identification of microbial interactions

Miscellaneous scripts

Pipeline for mutation benchmarking of various softwares.

Auxiliary scripts for Ong et al. (2013): Species Identification and Unbiased Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences

Bacterial LoFreq Wrapper for Basespace

Power Your Design

Viral Pipeline Runner