From 441ee59dee86893275b120f87176c0e51e9abc0f Mon Sep 17 00:00:00 2001 From: CamDavidsonPilon Date: Sun, 14 Jul 2019 15:45:47 -0400 Subject: [PATCH] need to update changelog on RTD --- docs/Changelog.rst | 272 ++++++++++++++++++++++++++------------------- 1 file changed, 158 insertions(+), 114 deletions(-) diff --git a/docs/Changelog.rst b/docs/Changelog.rst index 3afd27215..36b272ba7 100644 --- a/docs/Changelog.rst +++ b/docs/Changelog.rst @@ -1,19 +1,60 @@ Changelog ~~~~~~~~~ +0.22.1 +~~~~~~ + +New features +'''''''''''' + +- New univariate model, ``GeneralizedGammaFitter``. This model contains + many sub-models, so it is a good model to check fits. +- added a warning when a time-varying dataset had instantaneous deaths. +- added a ``initial_point`` option in univariate parametric fitters. +- ``initial_point`` kwarg is present in parametric univariate fitters + ``.fit`` +- ``event_table`` is now an attribute on all univariate fitters (if + right censoring) +- improvements to ``lifelines.utils.gamma`` + +API changes +''''''''''' + +- In AFT models, the column names in ``confidence_intervals_`` has + changed to include the alpha value. +- In AFT models, some column names in ``.summary`` and + ``.print_summary`` has changed to include the alpha value. +- In AFT models, some column names in ``.summary`` and + ``.print_summary`` includes confidence intervals for the exponential + of the value. + +Bug fixes +''''''''' + +- when using ``censors_show`` in plotting functions, the censor ticks + are now reactive to the estimate being shown. +- fixed an overflow bug in ``KaplanMeierFitter`` confidence intervals +- improvements in data validation for ``CoxTimeVaryingFitter`` + +.. _section-1: + 0.22.0 ^^^^^^ +.. _new-features-1: + New features '''''''''''' - Ability to create custom parametric regression models by specifying the cumulative hazard. This enables new and extensions of AFT models. - ``percentile(p)`` method added to univariate models that solves the - equation ``p = S(t⃰)`` for ``t⃰`` + equation ``p = S(t)`` for ``t`` - for parametric univariate models, the ``conditional_time_to_event_`` is now exact instead of an approximation. +.. _api-changes-1: + API changes ''''''''''' @@ -22,11 +63,11 @@ API changes is more clear (what is a hazard anyways?) - In Cox models, a new ``hazard_ratios_`` attribute is available which is the exponentiation of ``params_``. -- In regression models, the column names in ``confidence_intervals_`` - has changed to include the alpha value. -- In regression models, some column names in ``.summary`` and +- In Cox models, the column names in ``confidence_intervals_`` has + changed to include the alpha value. +- In Cox models, some column names in ``.summary`` and ``.print_summary`` has changed to include the alpha value. -- In regression models, some column names in ``.summary`` and +- In Cox models, some column names in ``.summary`` and ``.print_summary`` includes confidence intervals for the exponential of the value. - Significant changes to internal AFT code. @@ -34,27 +75,30 @@ API changes could set ``fit_intercept`` to False and not have to set ``ancillary_df`` - now one must specify a DataFrame. +.. _bug-fixes-1: + Bug fixes ''''''''' - for parametric univariate models, the ``conditional_time_to_event_`` is now exact instead of an approximation. +- fixed a name error bug in ``CoxTimeVaryingFitter.plot`` -.. _section-1: +.. _section-2: 0.21.5 - 2019-06-22 ^^^^^^^^^^^^^^^^^^^ I’m skipping 0.21.4 version because of deployment issues. -.. _new-features-1: +.. _new-features-2: New features '''''''''''' - ``scoring_method`` now a kwarg on ``sklearn_adapter`` -.. _bug-fixes-1: +.. _bug-fixes-2: Bug fixes ''''''''' @@ -64,12 +108,12 @@ Bug fixes - fixed visual bug that misaligned x-axis ticks and at-risk counts. Thanks @christopherahern! -.. _section-2: +.. _section-3: 0.21.3 - 2019-06-04 ^^^^^^^^^^^^^^^^^^^ -.. _new-features-2: +.. _new-features-3: New features '''''''''''' @@ -83,19 +127,19 @@ New features - ``CoxPHFitter.check_assumptions`` now accepts a ``columns`` parameter to specify only checking a subset of columns. -.. _bug-fixes-2: +.. _bug-fixes-3: Bug fixes ''''''''' - ``covariates_from_event_matrix`` handle nulls better -.. _section-3: +.. _section-4: 0.21.2 - 2019-05-16 ^^^^^^^^^^^^^^^^^^^ -.. _new-features-3: +.. _new-features-4: New features '''''''''''' @@ -107,7 +151,7 @@ New features that computes, you guessed it, the log-likelihood ratio test. Previously this was an internal API that is being exposed. -.. _api-changes-1: +.. _api-changes-2: API changes ''''''''''' @@ -119,17 +163,17 @@ API changes - removing ``_compute_likelihood_ratio_test`` on regression models. Use ``log_likelihood_ratio_test`` now. -.. _bug-fixes-3: +.. _bug-fixes-4: Bug fixes ''''''''' -.. _section-4: +.. _section-5: 0.21.1 - 2019-04-26 ^^^^^^^^^^^^^^^^^^^ -.. _new-features-4: +.. _new-features-5: New features '''''''''''' @@ -138,7 +182,7 @@ New features ``add_covariate_to_timeline`` - PiecewiseExponentialFitter now allows numpy arrays as breakpoints -.. _api-changes-2: +.. _api-changes-3: API changes ''''''''''' @@ -146,19 +190,19 @@ API changes - output of ``survival_table_from_events`` when collapsing rows to intervals now removes the “aggregate” column multi-index. -.. _bug-fixes-4: +.. _bug-fixes-5: Bug fixes ''''''''' - fixed bug in CoxTimeVaryingFitter when ax is provided, thanks @j-i-l! -.. _section-5: +.. _section-6: 0.21.0 - 2019-04-12 ^^^^^^^^^^^^^^^^^^^ -.. _new-features-5: +.. _new-features-6: New features '''''''''''' @@ -172,7 +216,7 @@ New features - a new interval censored dataset is available under ``lifelines.datasets.load_diabetes`` -.. _api-changes-3: +.. _api-changes-4: API changes ''''''''''' @@ -183,7 +227,7 @@ API changes - ``entries`` property in multivariate parametric models has a new Series name: ``entry`` -.. _bug-fixes-5: +.. _bug-fixes-6: Bug fixes ''''''''' @@ -193,19 +237,19 @@ Bug fixes - Fixed an error that didn’t let users use Numpy arrays in prediction for AFT models -.. _section-6: +.. _section-7: 0.20.5 - 2019-04-08 ^^^^^^^^^^^^^^^^^^^ -.. _new-features-6: +.. _new-features-7: New features '''''''''''' - performance improvements for ``print_summary``. -.. _api-changes-4: +.. _api-changes-5: API changes ''''''''''' @@ -215,7 +259,7 @@ API changes - in ``AalenJohansenFitter``, the ``variance`` parameter is renamed to ``variance_`` to align with the usual lifelines convention. -.. _bug-fixes-6: +.. _bug-fixes-7: Bug fixes ''''''''' @@ -224,12 +268,12 @@ Bug fixes test when using strata. - Fixed some plotting bugs with ``AalenJohansenFitter`` -.. _section-7: +.. _section-8: 0.20.4 - 2019-03-27 ^^^^^^^^^^^^^^^^^^^ -.. _new-features-7: +.. _new-features-8: New features '''''''''''' @@ -240,7 +284,7 @@ New features generating piecewise exp. data - Faster ``print_summary`` for AFT models. -.. _api-changes-5: +.. _api-changes-6: API changes ''''''''''' @@ -248,7 +292,7 @@ API changes - Pandas is now correctly pinned to >= 0.23.0. This was always the case, but not specified in setup.py correctly. -.. _bug-fixes-7: +.. _bug-fixes-8: Bug fixes ''''''''' @@ -257,12 +301,12 @@ Bug fixes - ``PiecewiseExponentialFitter`` is available with ``from lifelines import *``. -.. _section-8: +.. _section-9: 0.20.3 - 2019-03-23 ^^^^^^^^^^^^^^^^^^^ -.. _new-features-8: +.. _new-features-9: New features '''''''''''' @@ -275,12 +319,12 @@ New features ``plot_survival_function`` and ``confidence_interval_survival_function_``. -.. _section-9: +.. _section-10: 0.20.2 - 2019-03-21 ^^^^^^^^^^^^^^^^^^^ -.. _new-features-9: +.. _new-features-10: New features '''''''''''' @@ -295,7 +339,7 @@ New features - add a ``lifelines.plotting.qq_plot`` for univariate parametric models that handles censored data. -.. _api-changes-6: +.. _api-changes-7: API changes ''''''''''' @@ -304,7 +348,7 @@ API changes @vpolimenov! - The ``C`` column in ``load_lcd`` dataset is renamed to ``E``. -.. _bug-fixes-8: +.. _bug-fixes-9: Bug fixes ''''''''' @@ -320,7 +364,7 @@ Bug fixes the q parameter was below the truncation limit. This should have been ``-np.inf`` -.. _section-10: +.. _section-11: 0.20.1 - 2019-03-16 ^^^^^^^^^^^^^^^^^^^ @@ -334,7 +378,7 @@ Bug fixes decades of development. - suppressed unimportant warnings -.. _api-changes-7: +.. _api-changes-8: API changes ''''''''''' @@ -344,7 +388,7 @@ API changes This is no longer the case. A 0 will still be added if there is a duration (observed or not) at 0 occurs however. -.. _section-11: +.. _section-12: 0.20.0 - 2019-03-05 ^^^^^^^^^^^^^^^^^^^ @@ -353,7 +397,7 @@ API changes recent installs where Py3. - Updated minimum dependencies, specifically Matplotlib and Pandas. -.. _new-features-10: +.. _new-features-11: New features '''''''''''' @@ -361,7 +405,7 @@ New features - smarter initialization for AFT models which should improve convergence. -.. _api-changes-8: +.. _api-changes-9: API changes ''''''''''' @@ -373,19 +417,19 @@ API changes transposed now (previous parameters where columns, now parameters are rows). -.. _bug-fixes-9: +.. _bug-fixes-10: Bug fixes ''''''''' - Fixed a bug with plotting and ``check_assumptions``. -.. _section-12: +.. _section-13: 0.19.5 - 2019-02-26 ^^^^^^^^^^^^^^^^^^^ -.. _new-features-11: +.. _new-features-12: New features '''''''''''' @@ -395,24 +439,24 @@ New features features or categorical variables. - Convergence improvements for AFT models. -.. _section-13: +.. _section-14: 0.19.4 - 2019-02-25 ^^^^^^^^^^^^^^^^^^^ -.. _bug-fixes-10: +.. _bug-fixes-11: Bug fixes ''''''''' - remove some bad print statements in ``CoxPHFitter``. -.. _section-14: +.. _section-15: 0.19.3 - 2019-02-25 ^^^^^^^^^^^^^^^^^^^ -.. _new-features-12: +.. _new-features-13: New features '''''''''''' @@ -424,12 +468,12 @@ New features - Performance increase to ``print_summary`` in the ``CoxPHFitter`` and ``CoxTimeVaryingFitter`` model. -.. _section-15: +.. _section-16: 0.19.2 - 2019-02-22 ^^^^^^^^^^^^^^^^^^^ -.. _new-features-13: +.. _new-features-14: New features '''''''''''' @@ -437,7 +481,7 @@ New features - ``ParametricUnivariateFitters``, like ``WeibullFitter``, have smoothed plots when plotting (vs stepped plots) -.. _bug-fixes-11: +.. _bug-fixes-12: Bug fixes ''''''''' @@ -447,12 +491,12 @@ Bug fixes - Univariate fitters are more flexiable and can allow 2-d and DataFrames as inputs. -.. _section-16: +.. _section-17: 0.19.1 - 2019-02-21 ^^^^^^^^^^^^^^^^^^^ -.. _new-features-14: +.. _new-features-15: New features '''''''''''' @@ -460,7 +504,7 @@ New features - improved stability of ``LogNormalFitter`` - Matplotlib for Python3 users are not longer forced to use 2.x. -.. _api-changes-9: +.. _api-changes-10: API changes ''''''''''' @@ -469,12 +513,12 @@ API changes ``PiecewiseExponential`` to the same as ``ExponentialFitter`` (from ``\lambda * t`` to ``t / \lambda``). -.. _section-17: +.. _section-18: 0.19.0 - 2019-02-20 ^^^^^^^^^^^^^^^^^^^ -.. _new-features-15: +.. _new-features-16: New features '''''''''''' @@ -487,7 +531,7 @@ New features - ``CoxPHFitter`` performance improvements (about 10%) - ``CoxTimeVaryingFitter`` performance improvements (about 10%) -.. _api-changes-10: +.. _api-changes-11: API changes ''''''''''' @@ -513,7 +557,7 @@ API changes means that the *default* for alpha is set to 0.05 in the latest lifelines, instead of 0.95 in previous versions. -.. _bug-fixes-12: +.. _bug-fixes-13: Bug Fixes ''''''''' @@ -530,7 +574,7 @@ Bug Fixes models. Thanks @airanmehr! - Fixed some Pandas <0.24 bugs. -.. _section-18: +.. _section-19: 0.18.6 - 2019-02-13 ^^^^^^^^^^^^^^^^^^^ @@ -540,7 +584,7 @@ Bug Fixes ``rank`` and ``km`` p-values now. - some performance improvements to ``qth_survival_time``. -.. _section-19: +.. _section-20: 0.18.5 - 2019-02-11 ^^^^^^^^^^^^^^^^^^^ @@ -561,7 +605,7 @@ Bug Fixes that can be used to turn off variance calculations since this can take a long time for large datasets. Thanks @pzivich! -.. _section-20: +.. _section-21: 0.18.4 - 2019-02-10 ^^^^^^^^^^^^^^^^^^^ @@ -571,7 +615,7 @@ Bug Fixes - adding left-truncation support to parametric univarite models with the ``entry`` kwarg in ``.fit`` -.. _section-21: +.. _section-22: 0.18.3 - 2019-02-07 ^^^^^^^^^^^^^^^^^^^ @@ -581,7 +625,7 @@ Bug Fixes warnings are more noticeable. - Improved some warning and error messages. -.. _section-22: +.. _section-23: 0.18.2 - 2019-02-05 ^^^^^^^^^^^^^^^^^^^ @@ -597,7 +641,7 @@ Bug Fixes Moved them all (most) to use ``autograd``. - ``LogNormalFitter`` no longer models ``log_sigma``. -.. _section-23: +.. _section-24: 0.18.1 2019-02-02 ^^^^^^^^^^^^^^^^^ @@ -608,7 +652,7 @@ Bug Fixes - use the ``autograd`` lib to help with gradients. - New ``LogLogisticFitter`` univariate fitter available. -.. _section-24: +.. _section-25: 0.18.0 - 2019-01-31 ^^^^^^^^^^^^^^^^^^^ @@ -645,7 +689,7 @@ Bug Fixes ``LinAlgError: Matrix is singular.`` and report back to the user advice. -.. _section-25: +.. _section-26: 0.17.5 - 2019-01-25 ^^^^^^^^^^^^^^^^^^^ @@ -653,7 +697,7 @@ Bug Fixes - more bugs in ``plot_covariate_groups`` fixed when using non-numeric strata. -.. _section-26: +.. _section-27: 0.17.4 -2019-01-25 ^^^^^^^^^^^^^^^^^^ @@ -665,7 +709,7 @@ Bug Fixes - ``groups`` is now called ``values`` in ``CoxPHFitter.plot_covariate_groups`` -.. _section-27: +.. _section-28: 0.17.3 - 2019-01-24 ^^^^^^^^^^^^^^^^^^^ @@ -673,7 +717,7 @@ Bug Fixes - Fix in ``compute_residuals`` when using ``schoenfeld`` and the minumum duration has only censored subjects. -.. _section-28: +.. _section-29: 0.17.2 2019-01-22 ^^^^^^^^^^^^^^^^^ @@ -684,7 +728,7 @@ Bug Fixes ``for`` loop. The downside is the code is more esoteric now. I’ve added comments as necessary though 🤞 -.. _section-29: +.. _section-30: 0.17.1 - 2019-01-20 ^^^^^^^^^^^^^^^^^^^ @@ -701,7 +745,7 @@ Bug Fixes - Fixes a Pandas performance warning in ``CoxTimeVaryingFitter``. - Performances improvements to ``CoxTimeVaryingFitter``. -.. _section-30: +.. _section-31: 0.17.0 - 2019-01-11 ^^^^^^^^^^^^^^^^^^^ @@ -722,7 +766,7 @@ Bug Fixes - some plotting improvemnts to ``plotting.plot_lifetimes`` -.. _section-31: +.. _section-32: 0.16.3 - 2019-01-03 ^^^^^^^^^^^^^^^^^^^ @@ -730,7 +774,7 @@ Bug Fixes - More ``CoxPHFitter`` performance improvements. Up to a 40% reduction vs 0.16.2 for some datasets. -.. _section-32: +.. _section-33: 0.16.2 - 2019-01-02 ^^^^^^^^^^^^^^^^^^^ @@ -741,14 +785,14 @@ Bug Fixes has lots of duplicate times. See https://github.com/CamDavidsonPilon/lifelines/issues/591 -.. _section-33: +.. _section-34: 0.16.1 - 2019-01-01 ^^^^^^^^^^^^^^^^^^^ - Fixed py2 division error in ``concordance`` method. -.. _section-34: +.. _section-35: 0.16.0 - 2019-01-01 ^^^^^^^^^^^^^^^^^^^ @@ -784,7 +828,7 @@ Bug Fixes ``lifelines.utils.to_episodic_format``. - ``CoxTimeVaryingFitter`` now accepts ``strata``. -.. _section-35: +.. _section-36: 0.15.4 ^^^^^^ @@ -792,14 +836,14 @@ Bug Fixes - bug fix for the Cox model likelihood ratio test when using non-trivial weights. -.. _section-36: +.. _section-37: 0.15.3 - 2018-12-18 ^^^^^^^^^^^^^^^^^^^ - Only allow matplotlib less than 3.0. -.. _section-37: +.. _section-38: 0.15.2 - 2018-11-23 ^^^^^^^^^^^^^^^^^^^ @@ -810,7 +854,7 @@ Bug Fixes - removed ``entry`` from ``ExponentialFitter`` and ``WeibullFitter`` as it was doing nothing. -.. _section-38: +.. _section-39: 0.15.1 - 2018-11-23 ^^^^^^^^^^^^^^^^^^^ @@ -819,7 +863,7 @@ Bug Fixes - Raise NotImplementedError if the ``robust`` flag is used in ``CoxTimeVaryingFitter`` - that’s not ready yet. -.. _section-39: +.. _section-40: 0.15.0 - 2018-11-22 ^^^^^^^^^^^^^^^^^^^ @@ -890,7 +934,7 @@ Bug Fixes When Estimating Risks in Pharmacoepidemiology” for a nice overview of the model. -.. _section-40: +.. _section-41: 0.14.6 - 2018-07-02 ^^^^^^^^^^^^^^^^^^^ @@ -898,7 +942,7 @@ Bug Fixes - fix for n > 2 groups in ``multivariate_logrank_test`` (again). - fix bug for when ``event_observed`` column was not boolean. -.. _section-41: +.. _section-42: 0.14.5 - 2018-06-29 ^^^^^^^^^^^^^^^^^^^ @@ -906,7 +950,7 @@ Bug Fixes - fix for n > 2 groups in ``multivariate_logrank_test`` - fix weights in KaplanMeierFitter when using a pandas Series. -.. _section-42: +.. _section-43: 0.14.4 - 2018-06-14 ^^^^^^^^^^^^^^^^^^^ @@ -923,7 +967,7 @@ Bug Fixes - New ``delay`` parameter in ``add_covariate_to_timeline`` - removed ``two_sided_z_test`` from ``statistics`` -.. _section-43: +.. _section-44: 0.14.3 - 2018-05-24 ^^^^^^^^^^^^^^^^^^^ @@ -935,7 +979,7 @@ Bug Fixes - adds a ``column`` argument to ``CoxTimeVaryingFitter`` and ``CoxPHFitter`` ``plot`` method to plot only a subset of columns. -.. _section-44: +.. _section-45: 0.14.2 - 2018-05-18 ^^^^^^^^^^^^^^^^^^^ @@ -943,7 +987,7 @@ Bug Fixes - some quality of life improvements for working with ``CoxTimeVaryingFitter`` including new ``predict_`` methods. -.. _section-45: +.. _section-46: 0.14.1 - 2018-04-01 ^^^^^^^^^^^^^^^^^^^ @@ -961,7 +1005,7 @@ Bug Fixes faster completion of ``fit`` for large dataframes, and up to 10% faster for small dataframes. -.. _section-46: +.. _section-47: 0.14.0 - 2018-03-03 ^^^^^^^^^^^^^^^^^^^ @@ -983,7 +1027,7 @@ Bug Fixes of a ``RuntimeWarning`` - New checks for complete separation in the dataset for regressions. -.. _section-47: +.. _section-48: 0.13.0 - 2017-12-22 ^^^^^^^^^^^^^^^^^^^ @@ -1012,7 +1056,7 @@ Bug Fixes group the same subjects together and give that observation a weight equal to the count. Altogether, this means a much faster regression. -.. _section-48: +.. _section-49: 0.12.0 ^^^^^^ @@ -1029,7 +1073,7 @@ Bug Fixes - Additional functionality to ``utils.survival_table_from_events`` to bin the index to make the resulting table more readable. -.. _section-49: +.. _section-50: 0.11.3 ^^^^^^ @@ -1041,7 +1085,7 @@ Bug Fixes observation or censorship. - More accurate prediction methods parametrics univariate models. -.. _section-50: +.. _section-51: 0.11.2 ^^^^^^ @@ -1049,14 +1093,14 @@ Bug Fixes - Changing liscense to valilla MIT. - Speed up ``NelsonAalenFitter.fit`` considerably. -.. _section-51: +.. _section-52: 0.11.1 - 2017-06-22 ^^^^^^^^^^^^^^^^^^^ - Python3 fix for ``CoxPHFitter.plot``. -.. _section-52: +.. _section-53: 0.11.0 - 2017-06-21 ^^^^^^^^^^^^^^^^^^^ @@ -1070,14 +1114,14 @@ Bug Fixes of a new ``loc`` kwarg. This is to align with Pandas deprecating ``ix`` -.. _section-53: +.. _section-54: 0.10.1 - 2017-06-05 ^^^^^^^^^^^^^^^^^^^ - fix in internal normalization for ``CoxPHFitter`` predict methods. -.. _section-54: +.. _section-55: 0.10.0 ^^^^^^ @@ -1092,7 +1136,7 @@ Bug Fixes mimic R’s ``basehaz`` API. - new ``predict_log_partial_hazards`` to ``CoxPHFitter`` -.. _section-55: +.. _section-56: 0.9.4 ^^^^^ @@ -1115,7 +1159,7 @@ Bug Fixes - performance improvements in ``CoxPHFitter`` - should see at least a 10% speed improvement in ``fit``. -.. _section-56: +.. _section-57: 0.9.2 ^^^^^ @@ -1124,7 +1168,7 @@ Bug Fixes - throw an error if no admissable pairs in the c-index calculation. Previously a NaN was returned. -.. _section-57: +.. _section-58: 0.9.1 ^^^^^ @@ -1132,7 +1176,7 @@ Bug Fixes - add two summary functions to Weibull and Exponential fitter, solves #224 -.. _section-58: +.. _section-59: 0.9.0 ^^^^^ @@ -1148,7 +1192,7 @@ Bug Fixes - Default predict method in ``k_fold_cross_validation`` is now ``predict_expectation`` -.. _section-59: +.. _section-60: 0.8.1 - 2015-08-01 ^^^^^^^^^^^^^^^^^^ @@ -1165,7 +1209,7 @@ Bug Fixes - scaling of smooth hazards in NelsonAalenFitter was off by a factor of 0.5. -.. _section-60: +.. _section-61: 0.8.0 ^^^^^ @@ -1184,7 +1228,7 @@ Bug Fixes ``lifelines.statistics. power_under_cph``. - fixed a bug when using KaplanMeierFitter for left-censored data. -.. _section-61: +.. _section-62: 0.7.1 ^^^^^ @@ -1203,7 +1247,7 @@ Bug Fixes - refactor each fitter into it’s own submodule. For now, the tests are still in the same file. This will also *not* break the API. -.. _section-62: +.. _section-63: 0.7.0 - 2015-03-01 ^^^^^^^^^^^^^^^^^^ @@ -1222,7 +1266,7 @@ Bug Fixes duration remaining until the death event, given survival up until time t. -.. _section-63: +.. _section-64: 0.6.1 ^^^^^ @@ -1234,7 +1278,7 @@ Bug Fixes your work is to sum up the survival function (for expected values or something similar), it’s more difficult to make a mistake. -.. _section-64: +.. _section-65: 0.6.0 - 2015-02-04 ^^^^^^^^^^^^^^^^^^ @@ -1257,7 +1301,7 @@ Bug Fixes - In ``KaplanMeierFitter``, ``epsilon`` has been renamed to ``precision``. -.. _section-65: +.. _section-66: 0.5.1 - 2014-12-24 ^^^^^^^^^^^^^^^^^^ @@ -1278,7 +1322,7 @@ Bug Fixes ``lifelines.plotting.add_at_risk_counts``. - Fix bug Epanechnikov kernel. -.. _section-66: +.. _section-67: 0.5.0 - 2014-12-07 ^^^^^^^^^^^^^^^^^^ @@ -1291,7 +1335,7 @@ Bug Fixes - add test for summary() - Alternate metrics can be used for ``k_fold_cross_validation``. -.. _section-67: +.. _section-68: 0.4.4 - 2014-11-27 ^^^^^^^^^^^^^^^^^^ @@ -1303,7 +1347,7 @@ Bug Fixes - Fixes bug in 1-d input not returning in CoxPHFitter - Lots of new tests. -.. _section-68: +.. _section-69: 0.4.3 - 2014-07-23 ^^^^^^^^^^^^^^^^^^ @@ -1324,7 +1368,7 @@ Bug Fixes - Adds option ``include_likelihood`` to CoxPHFitter fit method to save the final log-likelihood value. -.. _section-69: +.. _section-70: 0.4.2 - 2014-06-19 ^^^^^^^^^^^^^^^^^^ @@ -1344,7 +1388,7 @@ Bug Fixes from failing so often (this a stop-gap) - pep8 everything -.. _section-70: +.. _section-71: 0.4.1.1 ^^^^^^^ @@ -1357,7 +1401,7 @@ Bug Fixes - Adding more robust cross validation scheme based on issue #67. - fixing ``regression_dataset`` in ``datasets``. -.. _section-71: +.. _section-72: 0.4.1 - 2014-06-11 ^^^^^^^^^^^^^^^^^^ @@ -1376,7 +1420,7 @@ Bug Fixes - Adding a Changelog. - more sanitizing for the statistical tests =) -.. _section-72: +.. _section-73: 0.4.0 - 2014-06-08 ^^^^^^^^^^^^^^^^^^