@CellProfiler

CellProfiler

Software for quantitative analysis of biological images.

Pinned repositories

  1. CellProfiler

    An open-source application for biological image analysis

    Python 281 171

  2. CellProfiler-plugins

    Community-contributed and experimental CellProfiler modules.

    Python 13 10

  3. Distributed-CellProfiler

    Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.

    Python 9 2

  4. CellProfiler-Analyst

    Open-source software for exploring and analyzing large, high-dimensional image-derived data.

    Python 65 37

  5. tutorials

    CellProfiler tutorial pipelines and images

    Makefile 5 10

  6. examples

    Example CellProfiler pipelines.

    Makefile 3

  • An open-source application for biological image analysis

    Python 281 171 Updated Aug 19, 2018
  • CellProfiler Website

    JavaScript 1 4 Updated Aug 17, 2018
  • Community-contributed and experimental CellProfiler modules.

    Python 13 10 Updated Jul 31, 2018
  • Everything needed to build CellProfiler for your favorite environment.

    Python Updated Jul 24, 2018
  • CellProfiler tutorial pipelines and images

    Makefile 5 9 BSD-3-Clause Updated Jul 18, 2018
  • Read and write life sciences file formats

    Python 37 25 Updated Jul 11, 2018
  • CellProfiler’s Java dependencies

    Java 1 5 GPL-3.0 Updated Jun 20, 2018
  • Open-source software for exploring and analyzing large, high-dimensional image-derived data.

    Python 65 37 Updated Jun 7, 2018
  • Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.

    Python 9 2 Updated Jun 5, 2018
  • An open source image processing library

    Python 3 11 BSD-3-Clause Updated May 15, 2018
  • Jupyter notebooks for CellProfiler and friends

    Jupyter Notebook 2 3 Updated Mar 23, 2018
  • ⚠️ ARCHIVED ⚠️ CellProfiler 1.0 (Matlab-based), current version at: CellProfiler/CellProfiler

    Matlab 6 7 Updated Jan 24, 2018
  • A place to propose new features for CellProfiler

    Updated Nov 30, 2017
  • Example CellProfiler pipelines.

    Makefile 3 BSD-3-Clause Updated Nov 28, 2017
  • docker Archived

    Makefile 1 8 Updated Nov 16, 2017
  • Image stitching

    Python 3 4 Updated Aug 20, 2017
  • OLD cp website repo. Current repo is here: https://github.com/CellProfiler/cellprofiler.github.com. We are currently in the process of transferring any remaining and relevant issues to the current Github repo so that this repo can then be deleted.

    HTML 1 2 Updated Feb 8, 2017
  • Profiling modules from CellProfiler-Analyst for exploring and analyzing large, high-dimensional image-derived data. http://cellprofiler.org

    Python Updated Jun 10, 2016
  • BatchProfiler Archived

    Python 1 1 Updated Apr 4, 2016
  • tutorial Archived

    Python 3 Updated Mar 2, 2016
  • jenkins Archived

    Shell 1 2 Updated Jan 12, 2016
  • ZMQ connection between CellProfiler and Knime

    Java 1 1 BSD-3-Clause Updated Aug 25, 2015
  • 1 Updated Apr 13, 2015
  • Infrastructure for continuous integration and automatic builds of CellProfiler internally at the Broad institute

    Python 1 3 GPL-2.0 Updated Apr 13, 2015
  • CPCharm Archived

    Python 1 3 Updated Jan 23, 2015