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An open-source application for measuring phenotypes
Python Inno Setup
Latest commit 34600c3 May 18, 2016 @0x00B1 0x00B1 Merge pull request #2039 from CellProfiler#1590

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CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.


Compiled releases for Linux, OS X, and Windows are available from

Install from the Python Package Index (PyPI)

CellProfiler requires Python 2

$ pip install --editable

Install from Source


NumPy is the fundamental package for scientific computing with Python:

$ pip install numpy


$ pip install --editable .
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