CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.
Compiled releases for Linux, OS X, and Windows are available from cellprofiler.org/releases.
Install from the Python Package Index (PyPI)
CellProfiler requires Python 2
$ pip install --editable email@example.com:CellProfiler/CellProfiler.git#egg=cellprofiler
Install from Source
NumPy is the fundamental package for scientific computing with Python:
$ pip install numpy
$ pip install --editable .