CellProfiler Analyst 2.2.0 (Development)
Note: This version is heavily under development and not production-ready yet
Authors: Adam Fraser, Thouis R. Jones, David Dao, Jane Hung
Current Developers: David Dao, Jane Hung
Copyright 2016, The Broad Institute of MIT and Harvard.
Distributed under the BSD license.
Download current beta of Version 2.2.0 for Mac here: App for Mac OS
Download untested beta of Version 2.2.0 for Windows here: App for Windows
The app requires JDK 1.8 to be installed (not just JRE). http://www.oracle.com/technetwork/java/javase/downloads/jdk8-downloads-2133151.html Check the Java path.
Please note that CPA 2.2.0 is WIP and we will update the link on regular basis.
For a head start, download example dataset here: Example Dataset for CPA (zipped)
Builds upon CellProfiler dependencies, we need
About CellProfiler Analyst
CellProfiler Analyst allows interactive exploration and analysis of data, particularly from high-throughput, image-based experiments. Included is a supervised machine learning system which can be trained to recognize complicated and subtle phenotypes, for automatic scoring of millions of cells.
- Restoring visualization functionalities
- Cleaning up files
- Improving Evaluation for Classifier
- Including testing
- Include documentation
- Pixel-based Classifier (Deep Learning)
- Image Gallery
- Image Classification
CellProfiler Analyst development is discussed on the CellProfiler Forum list.
How to file new issues
Please attach sufficient information to reproduce the bug. For many bugs, it is appropriate to attach a properties file, a training set, or a screenshot.