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We released CellProfiler 3.0!
Here is a sampling of what might be up next:
- Python 3 compatibility
- Continuing to add 3D support to various CellProfiler modules
- dynamically discover and load CellProfiler modules
- multi-platform packages with Wheel
Paying down technical debt
- upgrade wxPython to wxPython-Phoenix
- replace Bio-Formats with imageio
- use Sphinx for documentation
Projects distinct from CellProfiler
We’re also working on new applications and libraries:
- Cytominer, an R package for mining perturbations.
- Keras-ResNet, state-of-the-art convolutional feature extraction.
- Keras-RCNN, state-of-the-art image segmentation and object detection models.
- Skopy, a fast and simple alternative to CellProfiler.