CellProfiler roadmap

Anne Carpenter edited this page Oct 27, 2017 · 55 revisions

We released CellProfiler 3.0!

It may take us awhile to recover from this pretty substantial overhaul, whose glorious details are described in a blog post. Meanwhile, CellProfiler is cited in well over 5,000 scientific papers!

Here is a sampling of what might be up next:

Features

  • Python 3 compatibility
  • Continuing to add 3D support to various CellProfiler modules
  • dynamically discover and load CellProfiler modules
  • multi-platform packages with Wheel

Paying down technical debt

  • upgrade wxPython to wxPython-Phoenix
  • replace cellprofiler.analysis and cellprofiler.analysis_worker with Celery
  • decouple cellprofiler.gui from cellprofiler
  • replace centrosome with scipy, skimage, and sklearn
  • replace Bio-Formats with imageio
  • use Sphinx for documentation

Projects distinct from CellProfiler

We’re also working on new applications and libraries:

  • Cytominer, an R package for mining perturbations.
  • Keras-ResNet, state-of-the-art convolutional feature extraction.
  • Keras-RCNN, state-of-the-art image segmentation and object detection models.
  • Skopy, a fast and simple alternative to CellProfiler.
You can’t perform that action at this time.
You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session.
Press h to open a hovercard with more details.