Skip to content
This repository

CellProfiler is open-source cellular image analysis software.

Octocat-spinner-32 BatchProfiler issue #37 use HDF5Dict directly to speed things up
Octocat-spinner-32 bioformats ImageReader has changed a bit, for the better, but it broke some test…
Octocat-spinner-32 cellprofiler issue #1105 - T for toggle outlines
Octocat-spinner-32 contrib Updated Bio-Formats web URLs
Octocat-spinner-32 imagej issue #1082 standardize versioning using the scijava POM. Got rid of …
Octocat-spinner-32 java issue #1082 standardize versioning using the scijava POM. Got rid of …
Octocat-spinner-32 jenkins Build and continuous integration (jenkins) for Linux
Octocat-spinner-32 killjavabridge Happy new year
Octocat-spinner-32 plugins Happy new year
Octocat-spinner-32 shortcuts Automatic Linux builds using Jenkins
Octocat-spinner-32 tutorial Added slide on tools, hide more complex examples
Octocat-spinner-32 .gitattributes Developer tutorial
Octocat-spinner-32 .gitignore .DS_Store banished!
Octocat-spinner-32 COPYING License clarifications
Octocat-spinner-32 CPy.py Happy new year
Octocat-spinner-32 CellProfiler.iss issue #1061 delete JAR files when installing over pre-existing Window…
Octocat-spinner-32 CellProfiler.py issue #989: twas pyreadline spewing all over everything
Octocat-spinner-32 CellProfiler64.iss issue #1061 delete JAR files when installing over pre-existing Window…
Octocat-spinner-32 CellProfilerIcon.icns missing items
Octocat-spinner-32 CellProfilerIcon.ico separate 1.0 and 2.0
Octocat-spinner-32 CellProfilerIcon.png Fixed crlf and file mode issues (hopefully)
Octocat-spinner-32 CellProfilerIcon_old.png Fixed crlf and file mode issues (hopefully)
Octocat-spinner-32 CellProfiler_python.bat separate 1.0 and 2.0
Octocat-spinner-32 CellProfiler_python.command Fixed crlf and file mode issues (hopefully)
Octocat-spinner-32 Cloning_in_git.txt Test
Octocat-spinner-32 LICENSE Happy new year
Octocat-spinner-32 Makefile.CP2 more copyright
Octocat-spinner-32 Makefile.CP2.32 more copyright
Octocat-spinner-32 Makefile.CP2.64 more copyright
Octocat-spinner-32 Makefile.CP2.centos5.64 more copyright
Octocat-spinner-32 Makefile.CP2.standard.64 more copyright
Octocat-spinner-32 Makefile.CP2.standard.64.repoqt more copyright
Octocat-spinner-32 Makefile.CP2.suse.64 more copyright
Octocat-spinner-32 Makefile.CP2.ubuntu.64 more copyright
Octocat-spinner-32 README.md Pointing to the wiki more
Octocat-spinner-32 TestNewBatch.py Happy new year
Octocat-spinner-32 cp_logo_small.png separate 1.0 and 2.0
Octocat-spinner-32 cpnose.py Happy new year
Octocat-spinner-32 decorator.py Fixed crlf and file mode issues (hopefully)
Octocat-spinner-32 external_dependencies.py Upgraded to Bio-Formats 5.0.0.rc4 and ImageJ Beta7.7 in order to supp…
Octocat-spinner-32 install.py Happy new year
Octocat-spinner-32 python-2.6.sh issue #1063 clear the pythonpath in the python-2.6.sh script
Octocat-spinner-32 python-centos.sh Fixed crlf and file mode issues (hopefully)
Octocat-spinner-32 requirements.txt Linux build
Octocat-spinner-32 setup.py Happy new year
Octocat-spinner-32 usr-bin-cellprofiler Linux: Don't change directory before starting CellProfiler.
Octocat-spinner-32 windows_setup.py Happy new year
README.md

CellProfiler is free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.

Our website, cellprofiler.org, is aimed at non-developer users and has lots of information about CellProfiler and how to use it.

The developer wiki covers topic such as how to build CellProfiler from source, how to set up a development environment with all of CellProfiler's dependencies, and the various resources set up to support CellProfiler development.

How to file new issues

If you have a bug or other issue to report, please read the wiki page on how to file new issues to learn the best way to report it.

Something went wrong with that request. Please try again.