diff --git a/img/favicons/wash_state_u_favicon.ico b/img/favicons/wash_state_u_favicon.ico new file mode 100644 index 00000000..53e3e4ca Binary files /dev/null and b/img/favicons/wash_state_u_favicon.ico differ diff --git a/scrapi/harvesters/wash_state_u.py b/scrapi/harvesters/wash_state_u.py new file mode 100644 index 00000000..667f2eea --- /dev/null +++ b/scrapi/harvesters/wash_state_u.py @@ -0,0 +1,18 @@ +''' +Harvester for the Washington State University Research Exchange for the SHARE project + +Example API call: http://research.wsulibs.wsu.edu:8080/oai/request?verb=ListRecords&metadataPrefix=oai_dc +''' +from __future__ import unicode_literals + +from scrapi.base import OAIHarvester + + +class WashuHarvester(OAIHarvester): + short_name = 'wash_state_u' + long_name = 'Washington State University Research Exchange' + url = 'http://research.wsulibs.wsu.edu:8080' + + base_url = 'http://research.wsulibs.wsu.edu:8080/oai/request' + property_list = ['identifier', 'date', 'format', 'type', 'setSpec'] + timezone_granularity = True diff --git a/tests/vcr/wash_state_u.yaml b/tests/vcr/wash_state_u.yaml new file mode 100644 index 00000000..22762892 --- /dev/null +++ b/tests/vcr/wash_state_u.yaml @@ -0,0 +1,1055 @@ +interactions: +- request: + body: null + headers: + Accept: ['*/*'] + Accept-Encoding: ['gzip, deflate'] + Connection: [keep-alive] + User-Agent: [python-requests/2.4.1 CPython/3.4.3 Linux/3.19.0-33-generic] + method: GET + uri: http://research.wsulibs.wsu.edu:8080/oai/request?verb=ListRecords&metadataPrefix=oai_dc&from=2015-12-14T00:00:00Z&until=2015-12-16T00:00:00Z + response: + body: {string: "2015-12-16T19:57:22Zhttp://research.wsulibs.wsu.edu:8080/oai/request
oai:research.libraries.wsu.edu:2376/57302015-12-14T00:26:20Zcom_2376_5655com_2376_606col_2376_5729
\nMalosi: An\ + \ Exploration of the Mead/Freeman Controversy and of Samoan Aggression\n\ + Mageo, Jeannette Marie\nSamoa\n\ + Psychological anthropology\nAggressiveness--Social\ + \ aspects\nThis article's intent is to take a\ + \ step toward clarifying the nature and the place of aggression in Samoan\ + \ social life. Aggression has always had a focal place in Samoan culture.\ + \ In pre-Christian times, Nafanua was the only divinity who was worshiped\ + \ throughout the Samoan islands (Stair 1897:220). Nafanua was a war goddess.\n\ + 2015-12-14T00:25:31Z\n2015-12-14T00:25:31Z\n\ + 1988\nArticle\nMageo,\ + \ Jeannette Marie. \u201CMalosi: An Exploration of the Mead/Freeman Controversy\ + \ and of Samoan Aggression.\u201D (1988). Pacific Studies 11(2):25-65.\n\ + http://hdl.handle.net/2376/5730\nen_US\n\ + Pacific Studies\n\n
oai:research.libraries.wsu.edu:2376/57312015-12-14T00:35:35Zcom_2376_5655com_2376_606col_2376_5729
\nInhibitions\ + \ and Compensations: A Study of the Effects of Negative Sanctions in Three\ + \ Pacific Cultures\nMageo, Jeannette Marie\n\ + Childbearing\nCultural sanctions\n\ + Pacific Islands\nPsychological anthropology\n\ + Oedipus is named after his injured feet because he represents\ + \ that part of ourselves lamed by the social sanctions. The fact that sanctions\ + \ used to control children have consequences for character is well documented\ + \ in psychological studies (see, for example, Aronson [1972] 1984:216). Ethnographers,\ + \ however, have difficulty documenting how cultures contribute to these consequences\ + \ (see Devos and Hippler 1969; Inkeles and Levinson 1969; Shweder 1979). This\ + \ study offers a solution to the problems that arise in the cross-cultural\ + \ study of socialization by focusing upon certain relations between cultural\ + \ ideology, language, and social institutions.\n2015-12-14T00:34:48Z\n\ + 2015-12-14T00:34:48Z\n1991\nArticle\n\ + Mageo, Jeannette Marie. \u201CInhibitions and Compensations:\ + \ A Study of the Effects of Negative Sanctions in Three Pacific Cultures.\u201D\ + \ (1991). Pacific Studies 14:1-40.\nhttp://hdl.handle.net/2376/5731\n\ + en_US\nPacific Studies\n\ + \n
oai:research.libraries.wsu.edu:2376/57322015-12-14T00:47:03Zcom_2376_5655com_2376_606col_2376_5729
\nHairdos and\ + \ Don\u2019ts: Hair Symbolism and Sexual History in Samoa\nMageo,\ + \ Jeannette Marie\nSamoa\nEthnography\n\ + Psychological anthropology\nHair\ + \ is one of the classical foci of scholarly musing about the body, attaining\ + \ this focal status through the seminal essay of Edmund Leach, \"Magical Hair.\"\ + \ My intention is to draw the strands of this debate into a coherent conversation\ + \ and to contribute to the colloquy by exploring transformations of feminine\ + \ sex roles in Samoa from contact to the present. I do so by viewing changes\ + \ in hair styles as indices of changes in these roles, arguing that the rules\ + \ for hairdos that pertained to young women in precontact Samoa paralleled\ + \ \"dos and don'ts\" for their sexual behavior and that changes in the former\ + \ and the latter coincided. I use historical and ethnographic sources to document\ + \ their changes, as well as data collected during my own eight-year residence\ + \ in Samoa from 1981 to 1989.\n2015-12-14T00:46:36Z\n\ + 2015-12-14T00:46:36Z\n1994\nArticle\n\ + Mageo, Jeannette Marie. \"Hairdos and Don\u2019ts: Hair Symbolism\ + \ and Sexual History in Samoa.\" (1994). Man 29:407-432.\n\ + http://hdl.handle.net/2376/5732\nen_US\n\ + Man\n\n
oai:research.libraries.wsu.edu:2376/57332015-12-14T00:56:45Zcom_2376_5655com_2376_606col_2376_5729
\nToward Historicizing\ + \ Gender in Polynesia: On Vilsoni Hereniko\u2019s Woven Gods and Regional\ + \ Patterns\nMageo, Jeannette Marie\nPolynesia--History\n\ + Samoa\nSexuality & culture\n\ + This article considers possible parallels between Rotuman\ + \ and Samoan gender history through Vilsoni Hereniko's book Woven Gods. Hereniko\ + \ draws upon the work of Victor Turner to analyze his Rotuman data, arguing\ + \ that wedding clowns reverse normative social structures. Wedding clowns\ + \ are expert female practitioners of Rotuman joking discourse. This discourse\ + \ is not only ritualized on special occasions but is also an everyday informal\ + \ discourse and, I argue, is in this sense normative; it counterbalances respect\ + \ discourse, which is likewise practiced in ritual (ceremonial contexts but\ + \ also in everyday polite contexts). In the Samoan precolonial sex-gender\ + \ system, males and females had difference discursive specialties---males\ + \ in politesse, females in joking. Joking was often sexual in nature and indexed\ + \ practices at odds with contemporary virginal ideals for girls. Rotuman wedding\ + \ clowns may represent traces of precolonial feminine gender practices that\ + \ resemble precolonial Samoan practices. Further, they offer a running commentary\ + \ on sex-gender colonialism.\n2015-12-14T00:54:14Z\n\ + 2015-12-14T00:54:14Z\n2000\nArticle\n\ + Mageo, Jeannette Marie. (2000). \u201CToward Historicizing\ + \ Gender in Polynesia: On Vilsoni Hereniko\u2019s Woven Gods and Regional\ + \ Patterns.\u201D Pacific Studies 22:93-121.\nhttp://hdl.handle.net/2376/5733\n\ + en_US\nPacific Studies\n\ + \n
oai:research.libraries.wsu.edu:2376/57342015-12-14T01:03:09Zcom_2376_5655com_2376_606col_2376_5729
\nCultural Psychodynamics:\ + \ The Audit, the Mirror, and the \"American Dream\"\nMageo,\ + \ Jeannette Marie\nPsychological anthropology\n\ + Middle class--United States\nChildrearing\n\ + Based on dream and life-history data and research on American\ + \ families in the US Northwest, this article argues that a contemporary US\ + \ middle-class model that I call the Close Family prescribes child-rearing\ + \ practices that alternate between adulation and audit. Adulation and auditing\ + \ are forms of social mirroring that make what Lacan calls \u201Cthe mirror\ + \ phase\u201D an enduring feature of American cultural psychology and produce\ + \ feelings of porosity and dependence that compel defensive assertions of\ + \ independence. Because these assertions are therefore common, they too take\ + \ the form of a cultural model\u2014the bounded person intrinsically separate\ + \ from social context that Geertz and others associate with the West\u2014\ + yet this individualistic model is secondary, helping people deny and dissociate\ + \ a more primary reaction. Models and defenses together, I argue, constitute\ + \ cultural psychodynamics. The case study of a young woman I call Ruby further\ + \ suggests that for aspirants to class mobility, what is a balance between\ + \ adulation and audit in the middle class tips toward audit, magnifying feelings\ + \ of shame and inadequacy and imposing one of the most formidable barriers\ + \ such aspirants must overcome.\n2015-12-14T01:02:37Z\n\ + 2015-12-14T01:02:37Z\n2015\nArticle\n\ + Mageo, Jeannette Marie. (2015). \u201CCultural Psychodynamics:\ + \ The Audit, the Mirror, and the \u2018American Dream.\u2019\u201D Current\ + \ Anthropology, 56(6).\nhttp://hdl.handle.net/2376/5734\n\ + en_US\nCurrent Anthropology\n\ + \n
oai:research.libraries.wsu.edu:2376/57362015-12-14T04:18:20Zcom_2376_5655com_2376_606col_2376_5735
\nObesity and\ + \ Diabetes. In State Policy Action Plan to Eliminate Health Disparities\n\ + Governor\u2019s Interagency Council on Health Disparities (WA)\n\ + Obesity--United States\nDiabetes--United\ + \ States\nThe Council develops recommendations\ + \ to eliminate health disparities by race, ethnicity, and gender. The Council\ + \ prioritizes health conditions and social detriments of health to identify\ + \ important topics for its Action Plans and update reports to the Legislature\ + \ and Governor. The Council submitted its inaugural State Policy Action Plan\ + \ to Eliminate Health Disparities in June 2010. The report included recommendations\ + \ on education, health insurance coverage, healthcare workforce diversity,\ + \ obesity, and diabetes. Marsha Quinlan participated in the creation of this\ + \ plan as a member of the Obesity and Diabetes Advisory Committee.\n\ + 2015-12-14T04:17:03Z\n2015-12-14T04:17:03Z\n\ + 2010-06\nOther\nhttp://hdl.handle.net/2376/5736\n\ + en_US\n\n
oai:research.libraries.wsu.edu:2376/57372015-12-14T04:25:19Zcom_2376_5655com_2376_606col_2376_5735
\nLocal Resource\ + \ Enhancement and Sex-biased Breastfeeding in a Caribbean Community\n\ + Quinlan, Robert J.\nQuinlan, Marsha B.\n\ + Flinn, Mark V.\nDominica\n\ + Breastfeeding\nCross-cultural studies\n\ + Parents often treat sons and daughters differently. Boys are\ + \ favored in some societies (Messer 1997), but in others girls receive preferential\ + \ treatment including better medical care and more frequent breastfeeding\ + \ (Cronk 2000). Cross-culturally, breastfeeding is a major component of early\ + \ parental care that directly affects child health. Here we examine female-biased\ + \ breastfeeding in Bwa Mawego, a horticultural community in the Commonwealth\ + \ of Dominica, and test hypotheses from parental investment theory about the\ + \ reasons for such bias (reviewed in CluttonBrock and Godfray 1991). Multiple\ + \ linear regression suggests that sex differences in children's time allocation\ + \ to productive activity account for female-biased breastfeeding in this community.\ + \ Ethnographic data from Bwa Mawego suggest that female-biased maternal care\ + \ results from male socioeconomic marginality and its effects on sex-specific\ + \ risks of parental investment.\n2015-12-14T04:24:38Z\n\ + 2015-12-14T04:24:38Z\n2005\nArticle\n\ + Quinlan, Robert J., Marsha B. Quinlan, and Mark V. Flinn. (2005)\ + \ Local Resource Enhancement and Sex-biased Breastfeeding in a Caribbean Community.\ + \ Current Anthropology, 46(3):471-480.\nhttp://hdl.handle.net/2376/5737\n\ + en_US\nCurrent Anthropology\n\ + \n
oai:research.libraries.wsu.edu:2376/57382015-12-14T04:34:03Zcom_2376_5655com_2376_606col_2376_5735
\nEthnomedicine\ + \ and Ethnobotany of Fright, a Caribbean Culture-bound Psychiatric Syndrome\n\ + Quinlan, Marsha B.\nTraditional medicine\n\ + Cross-cultural studies\n\"Fright\"\ + \ is an English-speaking Caribbean idiom for an illness, or ethnomedical syndrome,\ + \ of persistent distress. A parallel ethnopsychiatric idiom exists in the\ + \ French Antilles as s\xE9sisma. Fright is distinct from susto among Hispanics,\ + \ though both develop in the wake of traumatic events. West Indian ethnophysiology\ + \ (ethnoanatomy) theorizes that an overload of stressful emotions (fear, panic,\ + \ anguish or worry) causes a cold humoral state in which blood coagulates\ + \ causing prolonged distress and increased risks of other humorally cold illnesses.\ + \ Qualitative data on local explanatory models and treatment of fright were\ + \ collected using participant-observation, informal key informant interviews\ + \ and a village health survey. Ethnobotanical and epidemiological data come\ + \ from freelist (or \"free-list\") tasks, analyzed for salience, with nearly\ + \ all adults (N = 112) of an eastern village in Dominica, and a village survey\ + \ on medicinal plant recognition and use (N = 106).\n2015-12-14T04:31:55Z\n\ + 2015-12-14T04:31:55Z\n2010\nArticle\n\ + Quinlan, Marsha B. (2010) Ethnomedicine and Ethnobotany of\ + \ Fright, a Caribbean Culture-bound Psychiatric Syndrome. Journal of Ethnobiology\ + \ and Ethnomedicine 6:9.\nhttp://hdl.handle.net/2376/5738\n\ + en_US\nCreative Commons Attribution\ + \ 4.0 International\nhttps://creativecommons.org/licenses/by/4.0/\n\ + Journal of Ethnobiology and Ethnomedicine\n\n\ +
oai:research.libraries.wsu.edu:2376/57392015-12-14T04:40:40Zcom_2376_5655com_2376_606col_2376_5735
\nSidama Agro-Pastoralism\ + \ and Ethnobiological Classification of its Primary Plant, Enset (Ensete ventricosum)\n\ + Quinlan, Marsha B.\nQuinlan, Robert J.\n\ + Dira, S.J.\nEast Africa\n\ + Linguistic ethnobiology\nMusaceae\n\ + Ethnobotany\nPastoralism\n\ + Enset is an essential plant for the Ethiopian Sidama system\ + \ of agropastoralism. Sidama agropastoralism and the folk taxonomy of enset\ + \ is presented here in ethnographic context. One of several societies of Ethiopia\u2019\ + s enset complex, the highland Sidama are among the most wholly reliant on\ + \ enset and maintain more enset varieties in their gardens than other groups.\ + \ Sidama agro-pastoral systems revolve around human-enset-cattle interaction:\ + \ Sidama eat low-protein parts of enset; cattle eat high-protein parts of\ + \ enset; Sidama get protein from dairy; Sidama fertilize enset with cattle\ + \ manure. In the Sidama language, enset offers an example of Hunn\u2019s generic\ + \ elevation within the framework of Berlinian perceptual-taxonomic theory.\ + \ Weesho (enset) may serve both as a folk generic taxon and a life-form taxon\ + \ depending on the frame of reference. Such expansion allows for an intermediate\ + \ taxa translating to \u201Cmale\u201D or \u201Cfemale\u201D ensets, followed\ + \ by generic and specific taxa for kinds or \u201Cbreeds\u201D of enset. Generic\ + \ elevation offers descriptive magnification of nomenclature for enset, a\ + \ most salient species among Sidama people.\n2015-12-14T04:39:47Z\n\ + 2015-12-14T04:39:47Z\n2014\nArticle\n\ + Quinlan, MB; Quinlan, RJ and Dira, SJ. (2014). Sidama Agro-Pastoralism\ + \ and Ethnobiological Classification of its Primary Plant, Enset (Ensete ventricosum).\ + \ Ethnobiology Letters 5:116-125. DOI: 10.14237/ebl.5.2014.222.\n\ + http://hdl.handle.net/2376/5739\nen_US\n\ + Ethnobiology Letters\n\n
oai:research.libraries.wsu.edu:2376/57412015-12-14T16:38:45Zcom_2376_5655com_2376_606col_2376_5740
\nLong-term Anasazi\ + \ Land-Use Patterns and Forest Reduction: A Case Study from Southwest Colorado\n\ + Kohler, Timothy A.\nMatthews, Meredith\ + \ H.\nAncestral Pueblo culture\nEnvironmental\ + \ impact analysis\nArchaeology\nSpecies\ + \ of wood used for fuel changed significantly through time at a large Anasazi\ + \ village in southwestern \nColorado occupied from about A.D. 750 to 900.\ + \ Changes also occurred in other records of plant use from this \nsite,\ + \ in the fauna utilized, and in the proportional representation of hafted\ + \ tools. These and corroborating data \nfrom nearby sites suggest that\ + \ the Anasazi occupation of the Dolores River valley and vicinity resulted\ + \ in significant \nlocal deforestation. Anasazi settlement and mobility\ + \ practices were affected by climate, human impact on the \nenvironment\ + \ and regional population densities.\n2015-12-14T16:38:12Z\n\ + 2015-12-14T16:38:12Z\n1988\nArticle\n\ + Kohler, Timothy, Meredith Matthews. (1988). Long-term Anasazi\ + \ Land-Use Patterns and Forest Reduction: A Case Study from Southwest Colorado.\ + \ American Antiquity 53:537\u2013564.\nhttp://hdl.handle.net/2376/5741\n\ + en_US\nAmerican Antiquity\n\ + \n
oai:research.libraries.wsu.edu:2376/57422015-12-14T16:49:58Zcom_2376_5655com_2376_606col_2376_5740
\nFieldhouses,\ + \ Villages, and the Tragedy of the Commons in the Early Northern Anasazi Southwest\n\ + Kohler, Timothy A.\nAncestral Pueblo\ + \ culture\nLand use\nAgriculture--Southwestern\ + \ States\nThe appearance of field houses and\ + \ villages in the early northern Anasazi Southwest is interpreted as containing\ + \ information concerning inclusiveness of land ownership or control. Early\ + \ northern Anasazi villages probably practiced patterns of resource control\ + \ much like those documented historically in many pueblos, where agricultural\ + \ lands were frequently controlled at an atomistic level (by individuals or\ + \ households) so long as fields were in use, but remained communal property\ + \ in theory and could be reallocated to other members of the community. The\ + \ appearance of field houses may he an attempt to limit access to previously\ + \ free and unregulated lands and the resources thereon.\n\ + 2015-12-14T16:49:25Z\n2015-12-14T16:49:25Z\n\ + 1992\nArticle\nKohler,\ + \ Timothy A. (1992 ). Fieldhouses, Villages, and the Tragedy of the Commons\ + \ in the Early Northern Anasazi Southwest. American Antiquity 57:617\u2013\ + 635.\nhttp://hdl.handle.net/2376/5742\n\ + en_US\nAmerican Antiquity\n\ + \n
oai:research.libraries.wsu.edu:2376/57432015-12-14T17:22:52Zcom_2376_5655com_2376_606col_2376_5740
\nSunk-Cost Effects\ + \ Made Ancient Societies Vulnerable to Collapse\nJanssen,\ + \ Marco A\nKohler, Timothy A.\nScheffer,\ + \ Marten\nEnvironmental degradation\n\ + Adaptation\nRational choice theory\n\ + In this report we seek to unite these two explanations in\ + \ a model that suggests why and under what conditions societies faced with\ + \ resource degradation might \u201Cfail to adapt.\u201D We are not peddling\ + \ a new universal theory for societal collapse; we do hope to insert into\ + \ the anthropological conversation on collapse a mechanism\u2014little noticed\ + \ to date\u2014making some societies more vulnerable to collapse under certain\ + \ conditions. Our model, which we illustrate with a simple mathematical characterization,\ + \ is based on a well\u2010documented systematic deviation from rational decision\ + \ making known as the \u201Csunk\u2010cost effect\u201D (Arkes and Ayton 1999).\ + \ Rational\u2010choice theory tells us that one\u2019s choice between options\ + \ should be influenced not by prior investment but only by the expected future\ + \ costs and benefits of those options. Of course, prior investment may affect\ + \ the knowledge and experience of the decision maker, but such effects can\ + \ be included in the rational\u2010choice theory explanation of decision making.\ + \ Numerous studies (Arkes and Blumer 1985, Arkes and Ayton 1999, Teger 1980)\ + \ nevertheless demonstrate that humans do consider prior investment in deciding\ + \ what course of action to take.\n2015-12-14T17:16:25Z\n\ + 2015-12-14T17:16:25Z\n2003\nArticle\n\ + Janssen, Marco A., Timothy A. Kohler, and Marten Scheffer.\ + \ (2003). Sunk-Cost Effects Made Ancient Societies Vulnerable to Collapse.\ + \ Current Anthropology 44:722-728. (Preprinted as SFI 02-02-007.)\n\ + http://hdl.handle.net/2376/5743\nen_US\n\ + Copyright: University of Chicago Press\nCurrent\ + \ Anthropology\n\n
oai:research.libraries.wsu.edu:2376/57442015-12-14T18:10:03Zcom_2376_5655com_2376_606col_2376_5740
\nRaiding for\ + \ Women in the Prehispanic Northern Pueblo Southwest? A Pilot Examination\n\ + Kohler, Timothy A.\nTurner, Kathryn Kramer\n\ + Ancestral Pueblo culture\nChaco Canyon\ + \ (N.M.)\nSpatial data on sex ratios through\ + \ time from archaeological sites in the late pre-Hispanic northern U.S. Southwest\ + \ reveal significant regional and subregional departures from the expected\ + \ values. In the eleventh century AD, Chaco Canyon and its subregion contain\ + \ more women (or, possibly, fewer men) than expected, as does Aztec and its\ + \ subregion in the thirteenth century AD. At Aztec the female bias is coupled\ + \ with a contemporaneous male bias in the Mesa Verde subregion to the northwest.\ + \ Consideration of possible explanations for these discrepancies suggests\ + \ that there is strong evidence for raiding for women in the thirteenth-century\ + \ northern Southwest. This is also a possible explanation for the eleventh-century\ + \ Chacoan discrepancies, though in this case other explanations cannot be\ + \ ruled out.\n2015-12-14T18:08:45Z\n2015-12-14T18:08:45Z\n\ + 2006\nArticle\nKohler,\ + \ Timothy and Kathryn Kramer Turner. (2006). Raiding for Women in the Prehispanic\ + \ Northern Pueblo Southwest? A Pilot Examination. Current Anthropology 47:1035-1045.\n\ + http://hdl.handle.net/2376/5744\nen_US\n\ + Copyright: University of Chicago Press\nCurrent\ + \ Anthropology\n\n
oai:research.libraries.wsu.edu:2376/57452015-12-14T18:25:49Zcom_2376_5655com_2376_606col_2376_5740
\nHistorical\ + \ Ecology in the Mesa Verde Region: Results From The Village Project\n\ + Varien, Mark D.\nOrtman, Scott G.\n\ + Kohler, Timothy A.\nGlowacki, Donna M.\n\ + Johnson, C. David\nAncestral Pueblo culture\n\ + Land use\nMesa Verde\nAgriculture--History\n\ + Using the occupation histories of 3,176 habitation sites,\ + \ new estimates of maize-agriculture productivity, and an analysis of over\ + \ 1,700 construction timbers, we examine the historical ecology of Pueblo\ + \ peoples during their seven-century occupation (A.D. 600-1300) of a densely\ + \ settled portion of the Mesa Verde archaeological region. We identify two\ + \ cycles of population growth and decline, the earlier and smaller peaking\ + \ in the late-A.D. 800s, the later and larger in the mid-A.D. 1200s. We also\ + \ identify several episodes of immigration. Formation of aggregated settlements,\ + \ which we term community centers, is positively correlated with increasing\ + \ population and the time elapsed in each settlement cycle, and it persists\ + \ during periods of regional population decline, but it does not correlate\ + \ with climatic variation averaged over periods. Architectural and land-use\ + \ practices depleted piny on-juniper woodlands during the first cycle, but\ + \ more stable field systems and greater recycling of construction timber resulted\ + \ in more sustainable management of wood resources during the second cycle,\ + \ despite much higher population densities. Our estimates for maize production\ + \ are lower than previous estimates, especially for the A.D. 1200s, when population\ + \ reached its peak in the study area. Even so, considerable potential agricultural\ + \ production remained unused in the decades that immediately preceded the\ + \ complete depopulation of our study area.\n2015-12-14T18:25:19Z\n\ + 2015-12-14T18:25:19Z\n2007\nArticle\n\ + Varien, Mark D., Scott G. Ortman, Timothy Kohler, Donna M.\ + \ Glowacki, and C. David Johnson. (2007). Historical Ecology in the Mesa Verde\ + \ Region: Results From The Village Project. American Antiquity 72:273-299.\n\ + http://hdl.handle.net/2376/5745\nen_US\n\ + American Antiquity\n\n
oai:research.libraries.wsu.edu:2376/57462015-12-14T18:41:50Zcom_2376_5655com_2376_606col_2376_5740col_2376_5752
\nThe Neolithic\ + \ Demographic Transition in the U.S. Southwest\nKohler,\ + \ Timothy A.\nGlaude, Matt Pier\nBocquet-Appel,\ + \ Jean-Pierre\nKemp, Brian M.\nArchaeology\n\ + Demography\nAncestral Pueblo culture\n\ + Maize agriculture was practiced in the U.S. Southwest slightly\ + \ before 2000 B.C., but had a negligible impact on population growth rates\ + \ until the development or introduction of more productive land races; the\ + \ ability to successfully cultivate maize under a greater variety of conditions,\ + \ with dry farming especially important; the addition of beans, squash, and\ + \ eventually turkey to the diet; increased sedentism; and what we infer to\ + \ be the remapping of exchange networks and the development of efficient exchange\ + \ strategies in first-millennium-A.D. villages. Our estimates of birthrates\ + \ and growth rates are derived from the proportions of immature individuals\ + \ among human remains. These proportions are somewhat affected by warfare\ + \ in our region, and perhaps also by climate. Nevertheless, there is a strong\ + \ identifiable Neolithic Demographic Transition signal in the U.S. Southwest\ + \ in about the mid-first-millennium A.D. in most subregions, visible a few\ + \ hundred years after the introduction of well-fired ceramic containers, and\ + \ more or less contemporaneous with the first appearance of villages. Independent\ + \ genetic data derived from the mitochondrial genomes of present-day indigenous\ + \ populations of the Southwest are also consistent with the hypothesis that\ + \ a major demographic expansion occurred 1,500-2000 years ago in the Southwest.\n\ + 2015-12-14T18:40:57Z\n2015-12-14T18:40:57Z\n\ + 2008\nArticle\nKohler,\ + \ Timothy, Matt Pier Glaude, Jean-Pierre Bocquet-Appel, and Brian M. Kemp.\ + \ (2008). The Neolithic Demographic Transition in the U.S. Southwest. American\ + \ Antiquity 73:645-669 (also SFI Working Paper 08-05-022).\n\ + http://hdl.handle.net/2376/5746\nen_US\n\ + American Antiquity\n\n
oai:research.libraries.wsu.edu:2376/57472015-12-14T18:53:04Zcom_2376_5655com_2376_606col_2376_5740
\nResearch on\ + \ Coupled Human and Natural Systems (CHANS): Approach, Challenges, and Strategies\n\ + McConnell, William J.\nMillington, James\ + \ D. A.\nReo, Nicholas J.\nAlberti,\ + \ Marina\nAsbjornsen, Heidi\nBaker,\ + \ Lawrence A.\nBrozovi\u0107, Nicholas\n\ + Drinkwater, Laurie E.\nDrzyzga, Scott\ + \ A.\nFragoso, Jos\xE9\nHolland,\ + \ Daniel S.\nJantz, Claire A.\nKohler,\ + \ Timothy A.\nMaschner, Herbert D. G.\n\ + Monticino, Michael\nPodest\xE1, Guillermo\n\ + Pontius, Robert Gilmore, Jr.\nRedman,\ + \ Charles L.\nSailor, David\nUrquhart,\ + \ Gerald\nLiu, Jianguo\nCoupled\ + \ Human and Natural Systems\nHuman\u2013nature interactions\n\ + Understanding the complexity of human\u2013nature interactions\ + \ is central to the quest for both human well-being and global sustainability.\ + \ To build an understanding of these interactions, scientists, planners, resource\ + \ managers, policy makers, and communities increasingly are collaborating\ + \ across wide-ranging disciplines and knowledge domains. Scientists and others\ + \ are generating new integrated knowledge on top of their requisite specialized\ + \ knowledge to understand complex systems in order to solve pressing environmental\ + \ and social problems (e.g., Carpenter et al. 2009). One approach to this\ + \ sort of integration, bringing together detailed knowledge of various disciplines\ + \ (e.g., social, economic, biological, and geophysical), has become known\ + \ as the study of Coupled Human and Natural Systems, or CHANS (Liu et al.\ + \ 2007a, b). Read More: http://www.esajournals.org/doi/full/10.1890/0012-9623-92.2.218\n\ + 2015-12-14T18:51:50Z\n2015-12-14T18:51:50Z\n\ + 2011\nOther\nWilliam\ + \ J. McConnell, James D. A. Millington, Nicholas J. Reo, Marina Alberti, Heidi\ + \ Asbjornsen, Lawrence A. Baker, Nicholas Brozovi\u0107, Laurie E. Drinkwater,\ + \ Scott A. Drzyzga, Jos\xE9 Fragoso, Daniel S. Holland, Claire A. Jantz, Timothy\ + \ Kohler, Herbert D. G. Maschner, Michael Monticino, Guillermo Podest\xE1\ + , Robert Gilmore Pontius, Jr., Charles L. Redman, David Sailor, Gerald Urquhart,\ + \ and Jianguo Liu. (2011). Research on Coupled Human and Natural Systems (CHANS):\ + \ Approach, Challenges, and Strategies. Bulletin of the Ecological Society\ + \ of America April: 218-228.\nhttp://hdl.handle.net/2376/5747\n\ + en_US\nBulletin of the Ecological\ + \ Society of America\n\n
oai:research.libraries.wsu.edu:2376/57482015-12-14T19:33:23Zcom_2376_5655com_2376_606col_2376_5740
\nThe Better\ + \ Angels of Their Nature: Declining Violence Through Time among Prehispanic\ + \ Farmers of the Pueblo Southwest\nKohler, Timothy\ + \ A.\nOrtman, Scott G.\nGrundtisch,\ + \ Katie E.\nFitzpatrick, Carly M.\n\ + Cole, Sarah M.\nAncestral Pueblo culture\n\ + Violence\nMesa Verde\nThe\ + \ central Mesa Verde and the northern Rio Grande regions housed two of the\ + \ densest populations of pre-hispanic Pueblo peoples in the North American\ + \ Southwest. We plot incidence of violent trauma on human bone through time\ + \ in each region. Such violence peaked in the mid-A.D. 1100s in the central\ + \ Mesa Verde, and in general was higher through time there than in the northern\ + \ Rio Grande region. In the central Mesa Verde, but not in the northern Rio\ + \ Grande, there is a tendency for violence to be greater in periods of low\ + \ potential maize production per capita and high variance in maize production,\ + \ though these structural tendencies were on occasion overridden by historical\ + \ factors such as the expansion and demise of the Chacoan polity and the regional\ + \ depopulation. Violence generally declined through time in the northern Rio\ + \ Grande until the arrival of the Spanish, even as populations increased.\ + \ We propose that this decline was due to the combination of increased social\ + \ span of polities, the importance of inter-Pueblo sodalities, the nature\ + \ of religious practice, \u201Cgentle commerce,\u201D and increased adherence\ + \ to a set of nonviolent norms.\n2015-12-14T19:32:55Z\n\ + 2015-12-14T19:32:55Z\n2014\nArticle\n\ + Kohler, Timothy, Scott G. Ortman, Katie E. Grundtisch, Carly\ + \ M. Fitzpatrick, and Sarah M. Cole. (2014). The Better Angels of Their Nature:\ + \ Declining Violence Through Time among Prehispanic Farmers of the Pueblo\ + \ Southwest. American Antiquity 79(3): 444\u2013464.\nhttp://hdl.handle.net/2376/5748\n\ + en_US\nAmerican Antiquity\n\ + \n
oai:research.libraries.wsu.edu:2376/57492015-12-14T19:55:41Zcom_2376_5655com_2376_606col_2376_5740
\nA 2,000-year\ + \ reconstruction of the rain-fed maize agricultural niche in the US Southwest\n\ + Bocinsky, R. Kyle\nKohler, Timothy A.\n\ + Paleoclimate research\nAncestral Pueblo\ + \ culture\nAgriculture--History\nHumans\ + \ experience, adapt to and influence climate at local scales. Paleoclimate\ + \ research, however, tends to focus on continental, hemispheric or global\ + \ scales, making it difficult for archaeologists and paleoecologists to study\ + \ local effects. Here we introduce a method for high-frequency, local climate-field\ + \ reconstruction from tree-rings. We reconstruct the rain-fed maize agricultural\ + \ niche in two regions of the southwestern United States with dense populations\ + \ of prehispanic farmers. Niche size and stability are highly variable within\ + \ and between the regions. Prehispanic rain-fed maize farmers tended to live\ + \ in agricultural refugia\u2014areas most reliably in the niche. The timing\ + \ and trajectory of the famous thirteenth century Pueblo migration can be\ + \ understood in terms of relative niche size and stability. Local reconstructions\ + \ like these illuminate the spectrum of strategies past humans used to adapt\ + \ to climate change by recasting climate into the distributions of resources\ + \ on which they depended.\n2015-12-14T19:53:12Z\n\ + 2015-12-14T19:53:12Z\n2014\nArticle\n\ + R. Kyle Bocinsky, Timothy Kohler. (2014). A 2,000-year reconstruction\ + \ of the rain-fed maize agricultural niche in the US Southwest. Nature Communications\_\ + 5:5618. DOI:\_10.1038/ncomms6618.\nhttp://hdl.handle.net/2376/5749\n\ + en_US\nCreative Commons Attribution\ + \ License 4.0 International\nhttps://creativecommons.org/licenses/by/4.0/\n\ + Nature Communications\n\n
oai:research.libraries.wsu.edu:2376/57502015-12-14T20:19:24Zcom_2376_5655com_2376_606col_2376_5740
\nCultural Dynamics,\ + \ Deep Time, and Data: Planning Cyberinfrastructure Investments for Archaeology\n\ + Kintigh, Keith\nAltschul, Jeffrey H.\n\ + Kinzig, Ann P.\nKohler, Timothy A.\n\ + Limp, W. Fredrick\nMichener, William\ + \ K.\nSabloff, Jeremy A.\nHackett,\ + \ Edward J.\nLud\xE4scher, Bertram\n\ + Lynch, Clifford A.\nComputational infrastructure\n\ + Data management\nArchaeology\n\ + Archaeological data and research results are essential to\ + \ addressing such fundamental questions as the origins of human culture; the\ + \ origin, waxing, and waning of civilizations and cities; the response of\ + \ societies to long-term climate changes; and the systemic relationships implicated\ + \ in human-induced changes in the environment. However, we lack the capacity\ + \ for acquiring, managing, analyzing, and synthesizing the large data sets\ + \ needed to address these fundamental questions. We propose investments in\ + \ computational infrastructure that would transform archaeology\u2019s ability\ + \ to advance research on the field\u2019s most compelling questions with an\ + \ evidential base and inferential rigor that have heretofore been impossible.\ + \ At the same time, new infrastructure would make key archaeological data\ + \ accessible to interested researchers in other disciplines. We offer recommendations\ + \ regarding improved data management and availability, cyberinfrastructure\ + \ tool building, and social and cultural changes in the discipline. We propose\ + \ funding synthetic case studies that would demonstrate archaeology\u2019\ + s ability to contribute to transdisciplinary research on long-term social\ + \ dynamics and serve as a context to develop and test computational tools\ + \ and the analytical workflows that will be necessary to attack these questions.\ + \ The case studies would explore how emerging research in computer science\ + \ could empower this research and would simultaneously provide productive\ + \ challenges for computer science research.\n2015-12-14T20:17:20Z\n\ + 2015-12-14T20:17:20Z\n2015\nArticle\n\ + Keith Kintigh, Jeffrey H. Altschul, Ann P. Kinzig, Timothy\ + \ Kohler, W. Fredrick Limp, William K. Michener, Jeremy A. Sabloff, Edward\ + \ J. Hackett, Bertram Lud\xE4scher, and Clifford A. Lynch. (2015). Cultural\ + \ Dynamics, Deep Time, and Data: Planning Cyberinfrastructure Investments\ + \ for Archaeology. Advances in Archaeological Practice 3(1): 1-15. DOI: 10.7183/2326-3768.3.1.1\n\ + http://hdl.handle.net/2376/5750\nen_US\n\ + Advances in Archaeological Practice\n\n\ +
oai:research.libraries.wsu.edu:2376/57532015-12-15T02:31:01Zcom_2376_5655com_2376_606col_2376_5752
\nSex identification\ + \ of infants sacrificed to the ancient Aztec raingods in Tlatelolco, Mexico\n\ + De la Cruz, Isabel\nGonz\xE1lez-Oliver,\ + \ Ang\xE9lica\nKemp, Brian M.\nRom\xE1\ + n, Juan A.\nSmith, David Glenn\nTorre-Blanco,\ + \ Alfonso\nAztecs--Religion\nHuman\ + \ sacrifice--Mexico--Mexico City\nMorphometrics\n\ + Recent excavations of Temple R, dedicated to the Aztec god\ + \ of wind and rain, Ehecatl-Quetzalcoatl, at the archaeological site of Tlatelolco,\ + \ Mexico City, recovered the sacrificial remains of 37 subadults and 6 adults.\ + \ It is believed that this ceremonial complex was the site of an extraordinary\ + \ ceremony carried out during the great drought and famine of AD 1454\u2013\ + 57, a date consistent with the founding of this temple. The ages of 31 subadults\ + \ and 1 adult were estimated by standard morphometrics analysis of the skeletal\ + \ remains. Most of the subadults (66%) were children up to 3 years old. Through\ + \ the extraction of ancient DNA from these remains, it was possible to use\ + \ molecular techniques to determine the sex of the skeletal remains where\ + \ in many cases (subadults and fragmentary remains) morphometrics analyses\ + \ failed. Most, if not all, of these sacrificial victims were males. This\ + \ remarkable gender bias is consistent with the notion that the victims chosen\ + \ for sacrifice were a living impersonation of the god to whom they were offered.\n\ + 2015-12-15T02:27:29Z\n2015-12-15T02:27:29Z\n\ + 2008\nArticle\n2008\_\ + \ De la Cruz I, Gonz\xE1lez-Oliver A, Kemp BM, Rom\xE1n JA, Smith DG and Torre-Blanco\ + \ A.\_ \u201CSex identification of infants sacrificed to the ancient Aztec\ + \ raingods in Tlatelolco, Mexico.\u201D Current Anthropology 46: 519-526.\n\ + http://hdl.handle.net/2376/5753\nen_US\n\ + Copyright: University of Chicago Press\nCurrent\ + \ Anthropology\n\n
oai:research.libraries.wsu.edu:2376/57542015-12-15T03:05:04Zcom_2376_5655com_2376_606col_2376_5752
\nMitochondrial\ + \ DNA of Protohistoric Remains of an Arikara Population from South Dakota\ + \ (USA): Implications for the Macro-Siouan Language Hypothesis\n\ + Lawrence, Diana M.\nKemp, Brian M.\n\ + Eshleman, Jason\nJantz, Richard L.\n\ + Snow, Meradeth\nGeorge, Debra\n\ + Smith, David Glenn\nHuman Population\ + \ Genetics -- South Dakota\nSiouan Languages -- South\ + \ Dakota\nArikara Indians -- South Dakota -- Origin\n\ + This is an article accepted for publication in Human Biology,\ + \ volume 82, 2010, following peer review. The definitive publisher-authenticated\ + \ version is available from Wayne State University Press.\n\ + Mitochondrial DNA (mtDNA) was extracted from skeletal remains\ + \ excavated from three Arikara sites in South Dakota occupied between AD 1600\ + \ and 1832. The diagnostic markers of four mtDNA haplogroups to which most\ + \ Native Americans belong (A, B, C, and D) were successfully identified in\ + \ the extracts of 55 (87%) of the 63 samples studied. The frequencies of the\ + \ four haplogroups were 42%, 29%, 22%, and 7%, respectively, and principal\ + \ coordinates analysis and Fisher\u2019s exact tests were conducted to compare\ + \ these haplogroup frequencies with those from other populations. Both analyses\ + \ showed closer similarity among the Mohawk, Arikara, and Sioux populations\ + \ than between any of these three and any other of the comparison populations.\ + \ Portions of the first hypervariable segment (HVSI) of the mitochondrial\ + \ genome were successfully amplified and sequenced for 42 of these 55 samples,\ + \ and haplotype networks were constructed for two of the four haplogroups.\ + \ The sharing of highly derived lineages suggests that some recent admixture\ + \ of the Arikara with Algonquian-speaking and Siouanspeaking groups has occurred.\ + \ The Arikara shared more ancient lineages with both Siouan and Cherokee populations\ + \ than with any other population, consistent with the Macro-Siouan language\ + \ hypothesis that Iroquoian, Siouan, and Caddoan languages share a relatively\ + \ recent common ancestry.\n2015-12-15T02:48:15Z\n\ + 2015-12-15T02:48:15Z\n2010\nArticle\n\ + 2010\_ Lawrence DM, Kemp BM, Eshleman J, Jantz RL, Snow M,\ + \ George D, and Smith DG. \u201CMitochondrial DNA of Protohistoric Remains\ + \ of an Arikara Population from South Dakota (USA): Implications for the Macro-Siouan\ + \ Language Hypothesis.\u201D Human Biology 82:157-178. doi: 10.3378/027.082.0203.\n\ + http://hdl.handle.net/2376/5754\nen_US\n\ + Human Biology\n\n
oai:research.libraries.wsu.edu:2376/57552015-12-15T03:16:52Zcom_2376_5655com_2376_606col_2376_5752
\nLetter to the\ + \ Editor, Ancient DNA Methodology: Thoughts from Brian M. Kemp and David Glenn\ + \ Smith on \"Mitochondrial DNA of Protohistoric Remains of an Arikara Population\ + \ from South Dakota\"\nKemp, Brian M.\n\ + Smith, David Glenn\nMitochondrial DNA\n\ + Prehistoric Archaeology -- Research\nGenomics\ + \ -- Research\nThis is an article accepted for\ + \ publication in Human Biology, volume 82, 2010, following peer review. The\ + \ definitive publisher-authenticated version is available from Wayne State\ + \ University Press.\nOur paper \u201CMitochondrial\ + \ DNA of Protohistoric Remains of an Arikara Population from South Dakota:\ + \ Implications for the Macro-Siouan Language Hypothesis\u201D [Lawrence et\ + \ al. 2010 (this issue)] has been reviewed by two scholars, and although we\ + \ agree with the comments of the second reviewer, we object to the first reviewer\u2019\ + s statement that \"the Authors do not use currently accepted methods in ancient\ + \ DNA studies. the Authors have not followed the now classical stringent standards\ + \ for the authentications of ancient DNA. Unfortunately, Authors did not do\ + \ [the following]: (i) test to quantify the preservations of macromolecules\ + \ (amino acid or collagen), (ii) quantifications of macromolecules, (iii)\ + \ detections of long amplificates, (iv) amplifications of associated remains\ + \ (if any), (v) cloning, (vi) independent replications. Further, in this study\ + \ there is another fundamental question: the impossibility to track down modern\ + \ DNA human contaminations (see Sampietro et al. 2006) so the results, even\ + \ though interesting, are not supported by a strong scientific methodology.\"\ + \ We believe that the review was unfair and reflects viewpoints that are potentially\ + \ stifling to future discoveries and progression of the ancient DNA (aDNA)\ + \ field as a whole.\n2015-12-15T03:15:42Z\n\ + 2015-12-15T03:15:42Z\n2010\nOther\n\ + 2010\_ Kemp BM and Smith DG.\_ Letter to the Editor.\_\_ \u201C\ + Ancient DNA Methodology: \u2018Thoughts from Brian M. Kemp and David Glenn\ + \ Smith on \"Mitochondrial DNA of Protohistoric Remains of an Arikara Population\ + \ from South Dakota\u2019\u201D. Human Biology 82:227-238. Available at: http://digitalcommons.wayne.edu/humbiol/vol82/iss2/7.\n\ + http://hdl.handle.net/2376/5755\nen_US\n\ + Copyright: Wayne State University\nHuman\ + \ Biology\n\n
oai:research.libraries.wsu.edu:2376/57562015-12-15T03:30:29Zcom_2376_5655com_2376_606col_2376_5752
\nTo clone or\ + \ not to clone: Method analysis for retrieving consensus sequences in ancient\ + \ DNA samples\nWinters, Misa\nBarta,\ + \ Jodi Lynn\nMonroe, Cara\nKemp,\ + \ Brian M.\nAncient DNA\nSocial\ + \ And Behavioral Sciences\nDNA testing protocol\n\ + The challenges associated with the retrieval and authentication\ + \ of ancient DNA (aDNA) evidence are principally due to postmortem damage\ + \ which makes ancient samples particularly prone to contamination from \u2018\ + \u2018modern\u2019\u2019 DNA sources. The necessity for authentication of\ + \ results has led many aDNA researchers to adopt methods considered to be\ + \ \u2018\u2018gold standards\u2019\u2019 in the field, including cloning aDNA\ + \ amplicons as opposed to directly sequencing them. However, no standardized\ + \ protocol has emerged regarding the necessary number of clones to sequence,\ + \ how a consensus sequence is most appropriately derived, or how results should\ + \ be reported in the literature. In addition, there has been no systematic\ + \ demonstration of the degree to which direct sequences are affected by damage\ + \ or whether direct sequencing would provide disparate results from a consensus\ + \ of clones. To address this issue, a comparative study was designed to examine\ + \ both cloned and direct sequences amplified from ,3,500 year-old ancient\ + \ northern fur seal DNA extracts. Majority rules and the Consensus Confidence\ + \ Program were used to generate consensus sequences for each individual from\ + \ the cloned sequences, which exhibited damage at 31 of 139 base pairs across\ + \ all clones. In no instance did the consensus of clones differ from the direct\ + \ sequence. This study demonstrates that, when appropriate, cloning need not\ + \ be the default method, but instead, should be used as a measure of authentication\ + \ on a case-by-case basis, especially when this practice adds time and cost\ + \ to studies where it may be superfluous.\n2015-12-15T03:28:45Z\n\ + 2015-12-15T03:28:45Z\n2011\nArticle\n\ + 2011\_ Winters M, Barta JL, Monroe C, and Kemp BM \u201CTo\ + \ clone or not to clone: Method analysis for retrieving consensus sequences\ + \ in ancient DNA samples.\u201D\_ PLoS One 6(6): e21247. DOI: 10.1371/journal.pone.0021247.\n\ + http://hdl.handle.net/2376/5756\nen_US\n\ + Creative Commons Attribution License 4.0 International\n\ + https://creativecommons.org/licenses/by/4.0/\nPublic\ + \ Library of Science\n\n
oai:research.libraries.wsu.edu:2376/57572015-12-15T03:40:30Zcom_2376_5655com_2376_606col_2376_5752
\nAncient DNA\ + \ analysis of mid-Holocene individuals from the Northwest Coast of North America\ + \ reveals different evolutionary paths for mitogenomes\nCui,\ + \ Yinqiu\nLindo, John\nHughes,\ + \ Cris E.\nJohnson, Jesse W.\nHernandez,\ + \ Alvaro G.\nKemp, Brian M.\nMa,\ + \ Jian\nCunningham, Ryan\nPetzelt,\ + \ Barbara\nMitchell, Joycellyn\nArcher,\ + \ David\nCybulski, Jerome S.\nMalhi,\ + \ Ripan S.\nEvolution, Molecular\nGenome,\ + \ Mitochondrial\nIndians, North American -- Genetics\n\ + To gain a better understanding of North American population\ + \ history, complete mitochondrial genomes (mitogenomes) were generated from\ + \ four ancient and three living individuals of the northern Northwest Coast\ + \ of North America, specifically the north coast of British Columbia, Canada,\ + \ current home to the indigenous Tsimshian, Haida, and Nisga\u2019a. The mitogenomes\ + \ of all individuals were previously unknown and assigned to new sub-haplogroup\ + \ designations D4h3a7, A2ag and A2ah. The analysis of mitogenomes allows for\ + \ more detailed analyses of presumed ancestor\u2013descendant relationships\ + \ than sequencing only the HVSI region of the mitochondrial genome, a more\ + \ traditional approach in local population studies. The results of this study\ + \ provide contrasting examples of the evolution of Native American mitogenomes.\ + \ Those belonging to sub-haplogroups A2ag and A2ah exhibit temporal continuity\ + \ in this region for 5000 years up until the present day. Of possible associative\ + \ significance is that archaeologically identified house structures in this\ + \ region maintain similar characteristics for this same period of time, demonstrating\ + \ cultural continuity in residence patterns. The individual dated to 6000\ + \ years before present (BP) exhibited a mitogenome belonging to sub-haplogroup\ + \ D4h3a. This sub-haplogroup was earlier identified in the same general area\ + \ at 10300 years BP on Prince of Wales Island, Alaska, and may have gone extinct,\ + \ as it has not been observed in any living individuals of the Northwest Coast.\ + \ The presented case studies demonstrate the different evolutionary paths\ + \ of mitogenomes over time on the Northwest Coast.\n2015-12-15T03:39:26Z\n\ + 2015-12-15T03:39:26Z\n2013\nArticle\n\ + 2013 Cui Y, Lindo J, Hughes CE, Johnson JW, Hernandez A, Kemp\ + \ BM, Ma J, Cunningham R, Petzelt B, Mitchell J, Archer D, Cybulski JS, and\ + \ Malhi RS. \"Ancient DNA analysis of mid-Holocene individuals from the Northwest\ + \ Coast of North America reveals different evolutionary paths for mitogenomes\"\ + . PLoS One 8:e66948. DOI: 10.1371/journal.pone.0066948.\n\ + http://hdl.handle.net/2376/5757\nen_US\n\ + Creative Commons Attribution License 4.0 International\n\ + https://creativecommons.org/licenses/by/4.0/\nPublic\ + \ Library of Science\n\n
oai:research.libraries.wsu.edu:2376/57582015-12-15T03:55:31Zcom_2376_5655com_2376_606col_2376_5752
\nPatterns of\ + \ Admixture and Population Structure in Native Populations of Northwest North\ + \ America\nVerdu, Paul\nPemberton,\ + \ Trevor J.\nLaurent, Romain\nKemp,\ + \ Brian M.\nGonzalez-Oliver, Angelica\n\ + Gorodezky, Clara\nHughes, Cris E.\n\ + Shattuck, Milena R.\nPetzelt, Barbara\n\ + Mitchell, Joycelynn\nHarry, Harold\n\ + William, Theresa\nWorl, Rosita\n\ + Cybulski, Jerome S.\nRosenberg, Noah\ + \ A.\nMalhi, Ripan S.\nGenomics\ + \ -- Research\nPacific Northwest\nIndigenous\ + \ DNA\nAdmixture\nColonization\n\ + The initial contact of European populations with indigenous\ + \ populations of the Americas produced diverse admixture processes across\ + \ North, Central, and South America. Recent studies have examined the genetic\ + \ structure of indigenous populations of Latin America and the Caribbean and\ + \ their admixed descendants, reporting on the genomic impact of the history\ + \ of admixture with colonizing populations of European and African ancestry.\ + \ However, relatively little genomic research has been conducted on admixture\ + \ in indigenous North American populations. In this study, we analyze genomic\ + \ data at 475,109 single-nucleotide polymorphisms sampled in indigenous peoples\ + \ of the Pacific Northwest in British Columbia and Southeast Alaska, populations\ + \ with a well-documented history of contact with European and Asian traders,\ + \ fishermen, and contract laborers. We find that the indigenous populations\ + \ of the Pacific Northwest have higher gene diversity than Latin American\ + \ indigenous populations. Among the Pacific Northwest populations, interior\ + \ groups provide more evidence for East Asian admixture, whereas coastal groups\ + \ have higher levels of European admixture. In contrast with many Latin American\ + \ indigenous populations, the variance of admixture is high in each of the\ + \ Pacific Northwest indigenous populations, as expected for recent and ongoing\ + \ admixture processes. The results reveal some similarities but notable differences\ + \ between admixture patterns in the Pacific Northwest and those in Latin America,\ + \ contributing to a more detailed understanding of the genomic consequences\ + \ of European colonization events throughout the Americas.\n\ + 2015-12-15T03:54:24Z\n2015-12-15T03:54:24Z\n\ + 2014\nArticle\nVerdu\ + \ P, Pemberton TJ, Laurent R, Kemp BM, Gonzalez-Oliver A, Gorodezky C, Hughes\ + \ CE, Shattuck MR, Petzelt B, Mitchell J, Harry H, William T, Worl R, Cybulski\ + \ JS, Rosenberg NA, and Malhi RS.\_2014. \u201CPatterns of Admixture and Population\ + \ Structure in Native Populations of Northwest North America.\u201D \_PLoS\ + \ Genet 10:e1004530. DOI: 10.1371/journal.pgen.1004530.\n\ + http://hdl.handle.net/2376/5758\nen_US\n\ + Creative Commons Attribution 4.0 International\nhttps://creativecommons.org/licenses/by/4.0/\n\ + Public Library of Science\n\n
oai:research.libraries.wsu.edu:2376/57592015-12-15T04:06:40Zcom_2376_5655com_2376_606col_2376_5752
\nHow Much DNA\ + \ is Lost? Measuring DNA Loss of Short-Tandem-Repeat Length Fragments Targeted\ + \ by the PowerPlex 16\xAE System Using the Qiagen MinElute Purification Kit\n\ + Kemp, Brian M.\nWinters, Misa\n\ + Monroe, Cara\nBarta, Jodi Lynn\n\ + DNA fingerprinting\nDNA Microarrays\n\ + Genetics\nThis is an article accepted\ + \ for publication in Human Biology, 86 (4), 2014, following peer review. The\ + \ definitive publisher-authenticated version is available from Wayne State\ + \ University Press.\nThe success in recovering\ + \ genetic profiles from aged and degraded biological samples is diminished\ + \ by fundamental aspects of DNA extraction, as well as its long-term preservation,\ + \ that are not well understood. While numerous studies have been conducted\ + \ to determine whether one extraction method was superior to others, nearly\ + \ all of them were initiated with no knowledge of the actual starting DNA\ + \ quantity in the samples prior to extraction, so they ultimately compared\ + \ the outcome of all methods relative to the best. Using quantitative PCR\ + \ to estimate the copy count of synthetic standards before (i.e., \u201Ccopies\ + \ in\u201D) and after (i.e., \u201Ccopies out\u201D) purification by the Qiagen\ + \ MinElute PCR Purification Kit, we documented DNA loss within a pool of 16\ + \ diffferent-sized fragments ranging from 106 to 409 bp in length, corresponding\ + \ to those targeted by the PowerPlex 16 System (Promega, Madison, WI). Across\ + \ all standards from 104 to 107 copies/\u03BCL, loss averaged between 21.75%\ + \ and 60.56% (mean, 39.03%), which is not congruent with Qiagen\u2019s claim\ + \ that 80% of 70 bp to 4 kb fragments are retained using this product (i.e.,\ + \ 20% loss). Our study also found no clear relationship either between DNA\ + \ strand length and retention or between starting copy number and retention.\ + \ This suggests that there is no molecule bias across the MinElute column\ + \ membrane and highlights the need for manufacturers to clearly and accurately\ + \ describe on what their claims are based, and should also encourage researchers\ + \ to document DNA retention efficiencies of their own methods and protocols.\ + \ Understanding how and where to reduce loss of molecules during extraction\ + \ and purification will serve to generate clearer and more accurate data,\ + \ which will enhance the utility of ancient and low-copy-number DNA as a tool\ + \ for closing forensic cases or in reconstructing the evolutionary history\ + \ of humans and other organisms.\n2015-12-15T04:05:50Z\n\ + 2015-12-15T04:05:50Z\n2014\nArticle\n\ + Kemp BM, Winters M, Monroe C, and Barta JL.\_(2014). \u201C\ + How Much DNA is Lost? Measuring DNA Loss of Short-Tandem-Repeat Length Fragments\ + \ Targeted by the PowerPlex 16\xAE System Using the Qiagen MinElute Purification\ + \ Kit. Human Biology 86:313-329.\u201D Human Biology 86 (4). Available at\ + \ http://digitalcommons.wayne.edu/humbiol/vol86/iss4/6.\n\ + http://hdl.handle.net/2376/5759\nen_US\n\ + Copyright: Wayne State University Press\nHuman\ + \ Biology\n\n
oai:research.libraries.wsu.edu:2376/57602015-12-15T16:20:43Zcom_2376_5655com_2376_606col_2376_5740
\nForum: Grand\ + \ Challenges for Archaeology\nKintigh, Keith W.\n\ + Altschul, Jeffrey H.\nBeaudry, Mary C.\n\ + Drennan, Robert D.\nKinzig, Ann P.\n\ + Kohler, Timothy A.\nLimp, W. Fredrick\n\ + Maschner, Herbert D.G.\nMichener, William\ + \ K.\nPauketat, Timothy R.\nPeregrine,\ + \ Peter\nSabloff, Jeremy A.\nWilkinson,\ + \ Tony J.\nWright, Henry T.\nZeder,\ + \ Melinda A.\nArchaeology\nInfrastructure\ + \ investments\nThis article represents a systematic\ + \ effort to answer the question, What are archaeology\u2019s most important\ + \ scientific challenges? Starting with a crowd-sourced query directed broadly\ + \ to the professional community of archaeologists, the authors augmented,\ + \ prioritized, and refined the responses during a two-day workshop focused\ + \ specifically on this question. The resulting 25 \u201Cgrand challenges\u201D\ + \ focus on dynamic cultural processes and the operation of coupled human and\ + \ natural systems. We organize these challenges into five topics: (1) emergence,\ + \ communities, and complexity; (2) resilience, persistence, transformation,\ + \ and collapse; (3) movement, mobility, and migration; (4) cognition, behavior,\ + \ and identity; and (5) human-environment interactions. A discussion and a\ + \ brief list of references accompany each question. An important goal in identifying\ + \ these challenges is to inform decisions on infrastructure investments for\ + \ archaeology. Our premise is that the highest priority investments should\ + \ enable us to address the most important questions. Addressing many of these\ + \ challenges will require both sophisticated modeling and large-scale synthetic\ + \ research that are only now becoming possible. Although new archaeological\ + \ fieldwork will be essential, the greatest payoff will derive from investments\ + \ that provide sophisticated research access to the explosion in systematically\ + \ collected archaeological data that has occurred over the last several decades.\n\ + 2015-12-15T16:18:44Z\n2015-12-15T16:18:44Z\n\ + 2014\nArticle\nKeith\ + \ W. Kintigh, Jeffrey H. Altschul, Mary C. Beaudry, Robert D. Drennan, Ann\ + \ P. Kinzig, Timothy Kohler, W. Fredrick Limp, Herbert D.G. Maschner, William\ + \ K. Michener, Timothy R. Pauketat, Peter Peregrine, Jeremy A. Sabloff, Tony\ + \ J. Wilkinson, Henry T. Wright, and Melinda A. Zeder. (2014). Forum: Grand\ + \ Challenges for Archaeology. American Antiquity 79(1):5-24.\n\ + http://hdl.handle.net/2376/5760\nen_US\n\ + American Antiquity\n\n
oai:research.libraries.wsu.edu:2376/57612015-12-15T16:39:25Zcom_2376_5655com_2376_606col_2376_5725
\nZooarchaeological\ + \ Habitat Analysis of Ancient Maya Landscape Changes\nEmery,\ + \ Kitty F\nThornton, Erin Kennedy\n\ + Zooarchaeology\nAnimal habitat\n\ + Landscape change\nMaya collapse\n\ + Late Classic Maya\nConsensus has\ + \ not yet been reached regarding the role of human-caused environmental change\ + \ in the history of Classic Maya civilization. On one side of the debate,\ + \ researchers argue that growing populations and agricultural expansion resulted\ + \ in environmental over-exploitation that contributed to societal collapse.\ + \ Researchers on the other side of the debate propose more gradual environmental\ + \ change resulting from intentional and sustainable landscape management practices.\ + \ In this study, we use zooarchaeological data from 23 archaeological sites\ + \ in 11 inland drainage systems to evaluate the hypothesis of reduction of\ + \ forest cover due to anthropogenic activities across the temporal and spatial\ + \ span of the ancient Maya world. Habitat fidelity statistics derived from\ + \ zooarchaeological data are presented as a proxy for the abundance of various\ + \ habitat types across the landscape. The results of this analysis do not\ + \ support a model of extensive land clearance and instead suggest considerable\ + \ chronological and regional stability in the presence of animals from both\ + \ mature and secondary forest habitats. Despite relative stability, some chronological\ + \ variation in land cover was observed, but the variation does not fit expected\ + \ patterns of increased forest disturbance during periods of greatest population\ + \ expansion. These findings indicate a complex relationship between the ancient\ + \ Maya and the forested landscape.\n2015-12-15T16:39:01Z\n\ + 2015-12-15T16:39:01Z\n2008\nArticle\n\ + Emery, Kitty F. and Erin Kennedy Thornton. 2008a Zooarchaeological\ + \ Habitat Analysis of Ancient Maya Landscape Changes. Journal of Ethnobiology\ + \ 28(2): 154-178.\nhttp://hdl.handle.net/2376/5761\n\ + en_US\nJournal of Ethnobiology\n\ + \n
oai:research.libraries.wsu.edu:2376/57632015-12-15T20:37:36Zcom_2376_5655com_2376_606col_2376_5762
\nDetection of\ + \ Cytosine Methylation in Ancient DNA from Five Native American Populations\ + \ Using Bisulfite Sequencing\nSmith, Rick W.A.\n\ + Monroe, Cara\nBolnick, Deborah A.\n\ + Ancient DNA\nCytosine methylation\n\ + Genetics\nWhile cytosine methylation\ + \ has been widely studied in extant populations, relatively few studies have\ + \ analyzed methylation in ancient DNA. Most existing studies of epigenetic\ + \ marks in ancient DNA have inferred patterns of methylation in highly degraded\ + \ samples using post-mortem damage to cytosines as a proxy for cytosine methylation\ + \ levels. However, this approach limits the inference of methylation compared\ + \ with direct bisulfite sequencing, the current gold standard for analyzing\ + \ cytosine methylation at single nucleotide resolution. In this study, we\ + \ used direct bisulfite sequencing to assess cytosine methylation in ancient\ + \ DNA from the skeletal remains of 30 Native Americans ranging in age from\ + \ approximately 230 to 4500 years before present. Unmethylated cytosines were\ + \ converted to uracils by treatment with sodium bisulfite, bisulfite products\ + \ of a CpG-rich retrotransposon were pyrosequenced, and C-to-T ratios were\ + \ quantified for a single CpG position. We found that cytosine methylation\ + \ is readily recoverable from most samples, given adequate preservation of\ + \ endogenous nuclear DNA. In addition, our results indicate that the precision\ + \ of cytosine methylation estimates is inversely correlated with aDNA preservation,\ + \ such that samples of low DNA concentration show higher variability in measures\ + \ of percent methylation than samples of high DNA concentration. In particular,\ + \ samples in this study with a DNA concentration above 0.015 ng/\u03BCL generated\ + \ the most consistent measures of cytosine methylation. This study presents\ + \ evidence of cytosine methylation in a large collection of ancient human\ + \ remains, and indicates that it is possible to analyze epigenetic patterns\ + \ in ancient populations using direct bisulfite sequencing approaches.\n\ + 2015-12-15T20:35:16Z\n2015-12-15T20:35:16Z\n\ + 2015\nArticle\n2015.\ + \ Smith RWA, Monroe C, Bolnick D. Detection of Cytosine Methylation in Ancient\ + \ DNA from Five Native American Populations Using Bisulfite Sequencing. PLoS\ + \ ONE 10 (5). DOI: 10.1371/journal.pone.0125344.\nhttp://hdl.handle.net/2376/5763\n\ + en_US\nCreative Commons Attribution\ + \ 4.0 International\nhttps://creativecommons.org/licenses/by/4.0/\n\ + Public Library of Science\n\n
oai:research.libraries.wsu.edu:2376/57652015-12-15T22:37:06Zcom_2376_5655com_2376_606col_2376_5764
\nWhy Foragers\ + \ Choose Acorns Before Salmon: Modeling Back-loaded Resources vs. Front-Loaded\ + \ Resources\nTushingham, Shannon\nBettinger,\ + \ Robert L.\nArchaeology\nHuman\ + \ Behavioral Ecology\nEnvironmental Archaeology\n\ + Hunting and gathering societies\nSalmon\ + \ and acorns were the most important terrestrial foods in the diet of contact\ + \ period groups in northwestern California. Throughout the ethnography salmon\ + \ is said to be the primary staple, while acorns come in a close second. Salmon\ + \ are traditionally viewed as a low cost (high ranking) resource, while acorns\ + \ are viewed as a high cost (low ranking) food. If correct, why are salmon\ + \ not taken and stored en masse earlier?\n2015-12-15T22:36:36Z\n\ + 2015-12-15T22:36:36Z\n2010\nOther\n\ + Tushingham, Shannon and Robert L. Bettinger. 2010. Why Foragers\ + \ Choose Acorns Before Salmon: Modeling Back-loaded Resources vs. Front-Loaded\ + \ Resources. Proceedings of the Society for California Archaeology 24.\n\ + http://hdl.handle.net/2376/5765\nen_US\n\ + Proceedings of the Society for California Archaeology\n\ + \n
oai:research.libraries.wsu.edu:2376/57662015-12-15T22:43:41Zcom_2376_5655com_2376_606col_2376_5764
\nGC-MS Analysis\ + \ of Residues Reveals Nicotine in Two Late Prehistoric Pipes from CA-ALA-554\n\ + Eerkens, Jelmer\nTushingham, Shannon\n\ + Lentz, Kari\nBlake, Jennifer\n\ + Ardura, Dominique\nPalazoglu, Mine\n\ + Fiehn, Oliver\nPrehistoric Archaeology\n\ + Plant ecology\nTobacco\n\ + Archaeology--North America\nThree\ + \ pipes were recovered during excavations at CA-ALA-554. Ethnographically,\ + \ Native Californians smoked a range of plants, the most common of which is\ + \ tobacco, in pipes. In order to determine the specific uses of these pipes,\ + \ we extracted organic residues from the pipes and identified compounds using\ + \ Gas Chromatography-Mass Spectrometry. Results show that the pipes have strong\ + \ nicotine signatures, indicating they were used to smoke tobacco. Biomarkers\ + \ for other plants are not present. Although tobacco use was introduced to\ + \ California in ancient times, the precise date is unknown. The presence of\ + \ nicotine in these pipes has implications for the timing of when tobacco\ + \ entered California, and for indigenous horticultural practices.\n\ + 2015-12-15T22:43:05Z\n2015-12-15T22:43:05Z\n\ + 2012\nArticle\nEerkens,\ + \ Jelmer, Shannon Tushingham, Kari Lentz, Jennifer Blake, Dominique Ardura,\ + \ Mine Palazoglu, and Oliver Fiehn (2012). GC-MS Analysis of Residues Reveals\ + \ Nicotine in Two Late Prehistoric Pipes from CA-ALA-554. Proceedings of the\ + \ Society for California Archaeology 26:212-219.\nhttp://hdl.handle.net/2376/5766\n\ + en_US\nProceedings of the Society\ + \ for California Archaeology\n\n
oai:research.libraries.wsu.edu:2376/57672015-12-15T22:47:55Zcom_2376_5655com_2376_606col_2376_5764
\nExploring the\ + \ Future of Archaeology on the Plateau: The 2014 Washington State University\ + \ Museum of Anthropology Plateau Conference\nCollins,\ + \ Mary\nTushingham, Shannon\nArchaeology--North\ + \ America\nThe Intermontane Plateau region of\ + \ North America has an incredibly rich and unique environmental and cultural\ + \ history with amazing research potential. It is also home to a number of\ + \ thriving American Indian Tribes who are taking an active role in identifying\ + \ and protecting cultural resources. The potential to do interesting, important,\ + \ and meaningful work in an atmosphere of respectful collaboration is too\ + \ good to miss. Despite these opportunities, archaeological interest in the\ + \ region has not been as great as we think is warranted. There has not been\ + \ any significant exploration of contemporary theoretical topics or even cultural\ + \ historical synthesis or interpretation for a number of decades. The outside\ + \ world\u2019s awareness of the region has in large part been centered on\ + \ the archaeo-politics of the East Wenatchee Clovis find and the Ancient One\ + \ known as Kennewick Man.\n2015-12-15T22:47:27Z\n\ + 2015-12-15T22:47:27Z\n2014\nArticle\n\ + Collins, Mary and Shannon Tushingham. (2014). Exploring the\ + \ Future of Archaeology on the Plateau: The 2014 Washington State University\ + \ Museum of Anthropology Plateau Conference. SAA Record 14(5):26-31. http://onlinedigeditions.com/publication/?i=232900&p=28.\n\ + http://hdl.handle.net/2376/5767\nen_US\n\ + Society for American Archaeology, SAA Record\n\ + \n"} + headers: + Content-Type: [application/xml;charset=UTF-8] + Date: ['Wed, 16 Dec 2015 19:57:22 GMT'] + Server: [Apache-Coyote/1.1] + status: {code: 200, message: OK} +version: 1