{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":422683520,"defaultBranch":"master","name":"vamos","ownerLogin":"ChaissonLab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-10-29T18:55:52.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/35581706?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1718232600.0","currentOid":""},"activityList":{"items":[{"before":"a9f7eb5b8309f3dbf0e12503525ef3be561a347f","after":"3f2a62d8c7dd8260e97c9643b5469bcfc90790f0","ref":"refs/heads/master","pushedAt":"2024-06-12T22:31:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Updated the README","shortMessageHtmlLink":"Updated the README"}},{"before":null,"after":"7fc2f90513b34418c053d8300db0974228485ca5","ref":"refs/heads/mchaisso-patch-1","pushedAt":"2024-06-12T22:09:14.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"8ec109553aa8526fff850381c4fe4a8f9cdf5c39","after":"a9f7eb5b8309f3dbf0e12503525ef3be561a347f","ref":"refs/heads/master","pushedAt":"2024-06-12T22:08:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Fixed the link for hg38 motifs.","shortMessageHtmlLink":"Fixed the link for hg38 motifs."}},{"before":"dc29a62ae922335b35c6c673b0b1f0523f1c60ed","after":"8ec109553aa8526fff850381c4fe4a8f9cdf5c39","ref":"refs/heads/master","pushedAt":"2024-06-12T21:38:31.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Merge branch 'master' of https://github.com/chaissonlab/vamos","shortMessageHtmlLink":"Merge branch 'master' of https://github.com/chaissonlab/vamos"}},{"before":"6707654bedd401c92fe5362ca6f1945758365720","after":"dc29a62ae922335b35c6c673b0b1f0523f1c60ed","ref":"refs/heads/master","pushedAt":"2024-04-15T21:50:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"BidaGu","name":"Bida Gu","path":"/BidaGu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/93404892?s=80&v=4"},"commit":{"message":"added script to quickly generate haplotype allele features by annotated nucleotide sequences","shortMessageHtmlLink":"added script to quickly generate haplotype allele features by annotat…"}},{"before":"2e728f4bd226fbf495f3bf0dfe1af148f9fd2538","after":"6707654bedd401c92fe5362ca6f1945758365720","ref":"refs/heads/master","pushedAt":"2024-03-21T04:28:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Tried adding inttypes.h as an include to fix building on other platforms.","shortMessageHtmlLink":"Tried adding inttypes.h as an include to fix building on other platfo…"}},{"before":"0f0adfa5b41337f81043631c7977d06f19398798","after":"2e728f4bd226fbf495f3bf0dfe1af148f9fd2538","ref":"refs/heads/master","pushedAt":"2023-12-18T21:31:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Fixed makefile removing -lrt","shortMessageHtmlLink":"Fixed makefile removing -lrt"}},{"before":"9dbbf3717ff4810a5550883b9d5ee6e66535f4c9","after":"0f0adfa5b41337f81043631c7977d06f19398798","ref":"refs/heads/master","pushedAt":"2023-12-15T20:46:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Bump version againwq","shortMessageHtmlLink":"Bump version againwq"}},{"before":"b13138a762af1470a5ccfe04c4603ee199eedddf","after":"9dbbf3717ff4810a5550883b9d5ee6e66535f4c9","ref":"refs/heads/master","pushedAt":"2023-12-15T20:43:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Bumped version to reflect bug fix.","shortMessageHtmlLink":"Bumped version to reflect bug fix."}},{"before":"e30766ac3026e04c65c07e05ba7b6a3b2adbbcb7","after":"b13138a762af1470a5ccfe04c4603ee199eedddf","ref":"refs/heads/master","pushedAt":"2023-12-14T02:00:24.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Merge branch 'master' of https://github.com/chaissonlab/vamos","shortMessageHtmlLink":"Merge branch 'master' of https://github.com/chaissonlab/vamos"}},{"before":"e0c3c0c76a2026494113207444224244eab877d5","after":"e30766ac3026e04c65c07e05ba7b6a3b2adbbcb7","ref":"refs/heads/master","pushedAt":"2023-11-08T15:43:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Separated out printing of repeat units.w","shortMessageHtmlLink":"Separated out printing of repeat units.w"}},{"before":"c18933e8c7edbe8c91515eff2d6dbd03b0ed7b84","after":"e0c3c0c76a2026494113207444224244eab877d5","ref":"refs/heads/master","pushedAt":"2023-10-20T19:29:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Removed debug flag","shortMessageHtmlLink":"Removed debug flag"}},{"before":"b42a6f98df4c15638cc395797fac09087cdb4c4f","after":"c18933e8c7edbe8c91515eff2d6dbd03b0ed7b84","ref":"refs/heads/master","pushedAt":"2023-10-20T19:26:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Fixed a case where wraparound DP wasn't considered for nodes that\nhas a sequence with an input motif starting in after the first\nposition in the node.","shortMessageHtmlLink":"Fixed a case where wraparound DP wasn't considered for nodes that"}},{"before":"782ad1d943f34a6098c92e3f77c559831e4e829a","after":"b42a6f98df4c15638cc395797fac09087cdb4c4f","ref":"refs/heads/master","pushedAt":"2023-10-02T00:21:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Removed print statement.","shortMessageHtmlLink":"Removed print statement."}},{"before":"c82279f64d8c6508cf5f1386f55b7ff8400b8ef5","after":"782ad1d943f34a6098c92e3f77c559831e4e829a","ref":"refs/heads/master","pushedAt":"2023-10-02T00:19:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Fixed a bug in IO where the first record in each contig was skipped.","shortMessageHtmlLink":"Fixed a bug in IO where the first record in each contig was skipped."}},{"before":"a7d39b3f25d042623c8984261fefc72c3ba661aa","after":"c82279f64d8c6508cf5f1386f55b7ff8400b8ef5","ref":"refs/heads/master","pushedAt":"2023-09-29T16:26:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Actually testing compile","shortMessageHtmlLink":"Actually testing compile"}},{"before":"7cb0db658cf4f481882de99d8f0b52d4790ef8ae","after":"a7d39b3f25d042623c8984261fefc72c3ba661aa","ref":"refs/heads/master","pushedAt":"2023-09-29T16:25:54.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Bump","shortMessageHtmlLink":"Bump"}},{"before":"857cf1784b00217153a290a493d1212ce6483799","after":"7cb0db658cf4f481882de99d8f0b52d4790ef8ae","ref":"refs/heads/master","pushedAt":"2023-09-29T15:56:58.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Bump","shortMessageHtmlLink":"Bump"}},{"before":"6e0e974bf55965e255f988a29b02303da41212fc","after":"857cf1784b00217153a290a493d1212ce6483799","ref":"refs/heads/master","pushedAt":"2023-09-29T15:14:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Bump","shortMessageHtmlLink":"Bump"}},{"before":"157071ffe612f084e981bccc8b8574abd17812e7","after":"6e0e974bf55965e255f988a29b02303da41212fc","ref":"refs/heads/master","pushedAt":"2023-09-29T15:13:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Adding stdint for conda build","shortMessageHtmlLink":"Adding stdint for conda build"}},{"before":"7065a1429db962f56377d6e665b7d1f5423ef681","after":"157071ffe612f084e981bccc8b8574abd17812e7","ref":"refs/heads/master","pushedAt":"2023-09-29T04:34:56.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Bump","shortMessageHtmlLink":"Bump"}},{"before":"32b72f15fe5707155b95df184a987103df431ad6","after":"7065a1429db962f56377d6e665b7d1f5423ef681","ref":"refs/heads/master","pushedAt":"2023-09-29T04:03:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Bump version","shortMessageHtmlLink":"Bump version"}},{"before":"faa3fed297c80606c90d5d4a3e5c17861ea11f66","after":"32b72f15fe5707155b95df184a987103df431ad6","ref":"refs/heads/master","pushedAt":"2023-09-29T04:00:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Fixed build for conda","shortMessageHtmlLink":"Fixed build for conda"}},{"before":"f6f68035c6435ef3a838a3b348d089779489c15e","after":"faa3fed297c80606c90d5d4a3e5c17861ea11f66","ref":"refs/heads/master","pushedAt":"2023-09-29T00:57:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Fixed build for external + bioconda","shortMessageHtmlLink":"Fixed build for external + bioconda"}},{"before":"c9768f31ac91dd6250ae3b096b080d0c25364d16","after":"f6f68035c6435ef3a838a3b348d089779489c15e","ref":"refs/heads/master","pushedAt":"2023-09-28T23:59:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Fixed getting options.","shortMessageHtmlLink":"Fixed getting options."}},{"before":"4ebce59c98b9e12b283c0872dc89d832304fc5ef","after":"c9768f31ac91dd6250ae3b096b080d0c25364d16","ref":"refs/heads/master","pushedAt":"2023-09-28T23:59:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Added option to exclude vntr loci over a given length. This is to exclude\nloci where abpoa was crashing for read consensus.","shortMessageHtmlLink":"Added option to exclude vntr loci over a given length. This is to exc…"}},{"before":"f7034345bb73b84709ed36a12de99cd537440535","after":"4ebce59c98b9e12b283c0872dc89d832304fc5ef","ref":"refs/heads/master","pushedAt":"2023-09-28T17:47:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Bumped version, deleted a useless warning.","shortMessageHtmlLink":"Bumped version, deleted a useless warning."}},{"before":"c6e373476c89ac59b3585e6136fe6bd3bb77b44d","after":"f7034345bb73b84709ed36a12de99cd537440535","ref":"refs/heads/master","pushedAt":"2023-09-28T17:45:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Fixed quite a few bugs in the new IO including:\n - Fixed a major memory leak in msa code.\n - Correct assignment of haplotype from pre-phased bams\n - Correct annotation of deleted loci (useful for short STR loci)","shortMessageHtmlLink":"Fixed quite a few bugs in the new IO including:"}},{"before":"3a5e17bcfbece49380e143bb6a48e7b7209f110a","after":"c6e373476c89ac59b3585e6136fe6bd3bb77b44d","ref":"refs/heads/master","pushedAt":"2023-09-20T16:42:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Removed abPOA repo to use static copy","shortMessageHtmlLink":"Removed abPOA repo to use static copy"}},{"before":"56e65b65cfecf4e4c953f077ddcb9bcf7a170816","after":"3a5e17bcfbece49380e143bb6a48e7b7209f110a","ref":"refs/heads/master","pushedAt":"2023-09-20T16:28:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mchaisso","name":"Mark Chaisson","path":"/mchaisso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1372990?s=80&v=4"},"commit":{"message":"Manually adding abpoa and sse for bioconda to build","shortMessageHtmlLink":"Manually adding abpoa and sse for bioconda to build"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEY85F9wA","startCursor":null,"endCursor":null}},"title":"Activity · ChaissonLab/vamos"}