Collecting climt
  Using cached climt-0.9.1.tar.gz
Requirement already satisfied: numpy>=1.10 in /home/disk/eos4/mcgibbon/anaconda/lib/python2.7/site-packages (from climt)
Requirement already satisfied: pint>=0.7.0 in /home/disk/eos4/mcgibbon/anaconda/lib/python2.7/site-packages (from climt)
Requirement already satisfied: xarray>=0.8.0 in /home/disk/eos4/mcgibbon/anaconda/lib/python2.7/site-packages (from climt)
Requirement already satisfied: sympl>=0.2.1 in ./sympl (from climt)
Requirement already satisfied: cython>=0.25 in /home/disk/eos4/mcgibbon/anaconda/lib/python2.7/site-packages (from climt)
Requirement already satisfied: scipy>=0.18.1 in /home/disk/eos4/mcgibbon/anaconda/lib/python2.7/site-packages (from climt)
Requirement already satisfied: pandas>=0.15.0 in /home/disk/eos4/mcgibbon/anaconda/lib/python2.7/site-packages (from xarray>=0.8.0->climt)
Requirement already satisfied: six in /home/disk/eos4/mcgibbon/anaconda/lib/python2.7/site-packages (from sympl>=0.2.1->climt)
Requirement already satisfied: python-dateutil in /home/disk/eos4/mcgibbon/anaconda/lib/python2.7/site-packages (from pandas>=0.15.0->xarray>=0.8.0->climt)
Requirement already satisfied: pytz>=2011k in /home/disk/eos4/mcgibbon/anaconda/lib/python2.7/site-packages (from pandas>=0.15.0->xarray>=0.8.0->climt)
Building wheels for collected packages: climt
  Running setup.py bdist_wheel for climt: started
  Running setup.py bdist_wheel for climt: finished with status 'error'
  Complete output from command /home/disk/p/mcgibbon/anaconda/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-k_D69F/climt/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmp5zRFzDpip-wheel- --python-tag cp27:
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.linux-x86_64-2.7
  creating build/lib.linux-x86_64-2.7/climt
  copying climt/__init__.py -> build/lib.linux-x86_64-2.7/climt
  running egg_info
  writing requirements to climt.egg-info/requires.txt
  writing climt.egg-info/PKG-INFO
  writing top-level names to climt.egg-info/top_level.txt
  writing dependency_links to climt.egg-info/dependency_links.txt
  reading manifest file 'climt.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no files found matching '*.so' under directory 'climt'
  warning: no files found matching '*.dylib' under directory 'climt'
  no previously-included directories found matching 'climt/_lib/lib'
  no previously-included directories found matching 'climt/_lib/share'
  no previously-included directories found matching 'climt/_lib/include'
  no previously-included directories found matching 'climt/_lib/bin'
  no previously-included directories found matching 'climt/_lib/Open*'
  no previously-included directories found matching 'climt/_lib/fftw*'
  no previously-included directories found matching 'climt/_lib/shtns*'
  warning: no previously-included files found matching 'climt/_lib/.configured*'
  warning: no previously-included files found matching 'climt/_lib/log'
  warning: no previously-included files matching '*.pyc' found under directory 'climt'
  warning: no previously-included files matching '*.mod' found under directory 'climt'
  warning: no previously-included files matching '*.o' found under directory 'climt'
  warning: no previously-included files matching '*.c' found under directory 'climt'
  warning: no previously-included files matching '*.a' found under directory 'climt'
  warning: no previously-included files matching '__pycache__' found under directory '*'
  no previously-included directories found matching 'tests/__pycache__'
  warning: no files found matching '*.jpg' under directory 'docs'
  warning: no files found matching '*.png' under directory 'docs'
  warning: no files found matching '*.gif' under directory 'docs'
  writing manifest file 'climt.egg-info/SOURCES.txt'
  creating build/lib.linux-x86_64-2.7/climt/_components
  copying climt/_components/__init__.py -> build/lib.linux-x86_64-2.7/climt/_components
  copying climt/_components/_berger_solar_insolation.pyx -> build/lib.linux-x86_64-2.7/climt/_components
  copying climt/_components/berger_solar_insolation.py -> build/lib.linux-x86_64-2.7/climt/_components
  copying climt/_components/grid_scale_condensation.py -> build/lib.linux-x86_64-2.7/climt/_components
  copying climt/_components/held_suarez.py -> build/lib.linux-x86_64-2.7/climt/_components
  copying climt/_components/radiation.py -> build/lib.linux-x86_64-2.7/climt/_components
  copying climt/_components/slab_surface.py -> build/lib.linux-x86_64-2.7/climt/_components
  copying climt/_components/surface_ice.py -> build/lib.linux-x86_64-2.7/climt/_components
  creating build/lib.linux-x86_64-2.7/climt/_components/dcmip
  copying climt/_components/dcmip/__init__.py -> build/lib.linux-x86_64-2.7/climt/_components/dcmip
  copying climt/_components/dcmip/_dcmip.pyx -> build/lib.linux-x86_64-2.7/climt/_components/dcmip
  copying climt/_components/dcmip/component.py -> build/lib.linux-x86_64-2.7/climt/_components/dcmip
  creating build/lib.linux-x86_64-2.7/climt/_components/emanuel
  copying climt/_components/emanuel/__init__.py -> build/lib.linux-x86_64-2.7/climt/_components/emanuel
  copying climt/_components/emanuel/_emanuel_convection.pyx -> build/lib.linux-x86_64-2.7/climt/_components/emanuel
  copying climt/_components/emanuel/component.py -> build/lib.linux-x86_64-2.7/climt/_components/emanuel
  creating build/lib.linux-x86_64-2.7/climt/_components/gfs
  copying climt/_components/gfs/__init__.py -> build/lib.linux-x86_64-2.7/climt/_components/gfs
  copying climt/_components/gfs/_gfs_dynamics.pyx -> build/lib.linux-x86_64-2.7/climt/_components/gfs
  copying climt/_components/gfs/component.py -> build/lib.linux-x86_64-2.7/climt/_components/gfs
  creating build/lib.linux-x86_64-2.7/climt/_components/monitors
  copying climt/_components/monitors/__init__.py -> build/lib.linux-x86_64-2.7/climt/_components/monitors
  creating build/lib.linux-x86_64-2.7/climt/_components/rrtmg
  copying climt/_components/rrtmg/__init__.py -> build/lib.linux-x86_64-2.7/climt/_components/rrtmg
  creating build/lib.linux-x86_64-2.7/climt/_components/rrtmg/lw
  copying climt/_components/rrtmg/lw/__init__.py -> build/lib.linux-x86_64-2.7/climt/_components/rrtmg/lw
  copying climt/_components/rrtmg/lw/_rrtm_lw.pyx -> build/lib.linux-x86_64-2.7/climt/_components/rrtmg/lw
  copying climt/_components/rrtmg/lw/component.py -> build/lib.linux-x86_64-2.7/climt/_components/rrtmg/lw
  creating build/lib.linux-x86_64-2.7/climt/_components/rrtmg/sw
  copying climt/_components/rrtmg/sw/__init__.py -> build/lib.linux-x86_64-2.7/climt/_components/rrtmg/sw
  copying climt/_components/rrtmg/sw/_rrtm_sw.pyx -> build/lib.linux-x86_64-2.7/climt/_components/rrtmg/sw
  copying climt/_components/rrtmg/sw/component.py -> build/lib.linux-x86_64-2.7/climt/_components/rrtmg/sw
  creating build/lib.linux-x86_64-2.7/climt/_components/simple_physics
  copying climt/_components/simple_physics/__init__.py -> build/lib.linux-x86_64-2.7/climt/_components/simple_physics
  copying climt/_components/simple_physics/_simple_physics.pyx -> build/lib.linux-x86_64-2.7/climt/_components/simple_physics
  copying climt/_components/simple_physics/component.py -> build/lib.linux-x86_64-2.7/climt/_components/simple_physics
  creating build/lib.linux-x86_64-2.7/climt/_core
  copying climt/_core/__init__.py -> build/lib.linux-x86_64-2.7/climt/_core
  copying climt/_core/climt_components.py -> build/lib.linux-x86_64-2.7/climt/_core
  copying climt/_core/initialization.py -> build/lib.linux-x86_64-2.7/climt/_core
  copying climt/_core/util.py -> build/lib.linux-x86_64-2.7/climt/_core
  creating build/lib.linux-x86_64-2.7/climt/_data
  copying climt/_data/__init__.py -> build/lib.linux-x86_64-2.7/climt/_data
  creating build/lib.linux-x86_64-2.7/climt/_lib
  copying climt/_lib/Makefile -> build/lib.linux-x86_64-2.7/climt/_lib
  copying climt/_lib/OpenBLAS-0.2.19.tar.gz -> build/lib.linux-x86_64-2.7/climt/_lib
  copying climt/_lib/fftw-3.3.6-pl2.tar.gz -> build/lib.linux-x86_64-2.7/climt/_lib
  copying climt/_lib/shtns-2.7-r557.tar.gz -> build/lib.linux-x86_64-2.7/climt/_lib
  creating build/lib.linux-x86_64-2.7/climt/_lib/Darwin
  copying climt/_lib/Darwin/.temp -> build/lib.linux-x86_64-2.7/climt/_lib/Darwin
  creating build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/Makefile -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/Makefile.conf -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/Makefile.conf.gfortran -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/Makefile.conf.ifort -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/driver.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/dyn_finalize.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/dyn_init.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/dyn_run.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/finalize.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/gfs_namelist -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/grid_data.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/init.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/kinds.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/params.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/phy_data.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/phy_data_stub.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/phy_finalize.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/phy_finalize_stub.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/phy_init.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/phy_init_stub.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/phy_run.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/phy_run_hs.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/phy_run_stub.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/physcons.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/pressure_data.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/run.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/semimp_data.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/shtns.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  copying climt/_lib/GFS/spectral_data.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
  creating build/lib.linux-x86_64-2.7/climt/_lib/Linux
  copying climt/_lib/Linux/.temp -> build/lib.linux-x86_64-2.7/climt/_lib/Linux
  creating build/lib.linux-x86_64-2.7/climt/_lib/dcmip
  copying climt/_lib/dcmip/Makefile -> build/lib.linux-x86_64-2.7/climt/_lib/dcmip
  copying climt/_lib/dcmip/dcmip_initial_conditions_test_1_2_3_v5.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/dcmip
  copying climt/_lib/dcmip/dcmip_initial_conditions_test_4_v3.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/dcmip
  copying climt/_lib/dcmip/dcmip_initial_conditions_test_5_v1.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/dcmip
  creating build/lib.linux-x86_64-2.7/climt/_lib/emanuel
  copying climt/_lib/emanuel/Makefile -> build/lib.linux-x86_64-2.7/climt/_lib/emanuel
  copying climt/_lib/emanuel/convect43c.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/emanuel
  creating build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/Makefile -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/_rrtm_lw.pyx -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/mcica_random_numbers.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/mcica_subcol_gen_lw.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/parkind.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/parrrtm.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_cld.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_con.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_kg01.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_kg02.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_kg03.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_kg04.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_kg05.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_kg06.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_kg07.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_kg08.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_kg09.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_kg10.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_kg11.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_kg12.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_kg13.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_kg14.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_kg15.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_kg16.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_ncpar.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_ref.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_tbl.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_vsn.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrlw_wvn.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrtmg_lw_cldprmc.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrtmg_lw_cldprop.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrtmg_lw_init.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrtmg_lw_k_g.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrtmg_lw_rad.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrtmg_lw_rad.nomcica.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrtmg_lw_read_nc.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrtmg_lw_rtrn.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrtmg_lw_rtrnmc.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrtmg_lw_rtrnmr.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrtmg_lw_setcoef.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/rrtmg_lw_taumol.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  copying climt/_lib/rrtmg_lw/setup.py -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
  creating build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/Makefile -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/README -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/_rrtm_sw.pyx -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/mcica_random_numbers.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/mcica_subcol_gen_sw.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/parkind.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/parrrsw.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_aer.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_cld.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_con.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_kg16.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_kg17.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_kg18.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_kg19.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_kg20.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_kg21.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_kg22.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_kg23.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_kg24.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_kg25.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_kg26.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_kg27.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_kg28.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_kg29.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_ncpar.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_ref.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_tbl.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_vsn.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrsw_wvn.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrtmg_sw_cldprmc.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrtmg_sw_cldprop.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrtmg_sw_init.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrtmg_sw_k_g.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrtmg_sw_rad.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrtmg_sw_rad.nomcica.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrtmg_sw_reftra.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrtmg_sw_setcoef.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrtmg_sw_spcvmc.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrtmg_sw_spcvrt.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrtmg_sw_taumol.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/rrtmg_sw_vrtqdr.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  copying climt/_lib/rrtmg_sw/setup.py -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
  creating build/lib.linux-x86_64-2.7/climt/_lib/simple_physics
  copying climt/_lib/simple_physics/Makefile -> build/lib.linux-x86_64-2.7/climt/_lib/simple_physics
  copying climt/_lib/simple_physics/simple_physics_custom.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/simple_physics
  copying climt/_lib/simple_physics/simple_physics_v5_1.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/simple_physics
  running build_ext
  if [ ! -d fftw-3.3.6-pl2 ]; then tar -xvzf fftw-3.3.6-pl2.tar.gz > log 2>&1; fi; cd fftw-3.3.6-pl2; ./configure CFLAGS="-I/tmp/pip-build-k_D69F/climt/climt/_lib -L/tmp/pip-build-k_D69F/climt/climt/_lib/Linux/ -fPIC" LDFLAGS="-L/tmp/pip-build-k_D69F/climt/climt/_lib/Linux/" --prefix=/tmp/pip-build-k_D69F/climt/climt/_lib --enable-openmp --enable-avx --enable-avx2 > log 2>&1 && touch ../.configured_fftw
  make: *** [.configured_fftw] Error 1
  cythoning climt/_components/_berger_solar_insolation.pyx to climt/_components/_berger_solar_insolation.c
  building 'climt._components._berger_solar_insolation' extension
  creating build/temp.linux-x86_64-2.7
  creating build/temp.linux-x86_64-2.7/climt
  creating build/temp.linux-x86_64-2.7/climt/_components
  gcc -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -fPIC -I/home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include -I/tmp/pip-build-k_D69F/climt/climt/_lib/include -I/home/disk/p/mcgibbon/anaconda/include/python2.7 -c climt/_components/_berger_solar_insolation.c -o build/temp.linux-x86_64-2.7/climt/_components/_berger_solar_insolation.o
  In file included from /home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0,
                   from /home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
                   from /home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                   from climt/_components/_berger_solar_insolation.c:526:
  /home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   #warning "Using deprecated NumPy API, disable it by " \
    ^
  climt/_components/_berger_solar_insolation.c: In function ‘__pyx_pw_5climt_11_components_24_berger_solar_insolation_1get_orbital_parameters’:
  climt/_components/_berger_solar_insolation.c:2662:67: warning: ‘__pyx_v_pi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
     __pyx_t_5climt_11_components_24_berger_solar_insolation_DTYPE_t __pyx_v_pi;
                                                                     ^
  gcc -pthread -shared -L/home/disk/eos4/mcgibbon/anaconda/lib -Wl,-rpath=/home/disk/eos4/mcgibbon/anaconda/lib,--no-as-needed -fPIC build/temp.linux-x86_64-2.7/climt/_components/_berger_solar_insolation.o -L/home/disk/eos4/mcgibbon/anaconda/lib -lpython2.7 -o build/lib.linux-x86_64-2.7/climt/_components/_berger_solar_insolation.so
  cythoning climt/_components/gfs/_gfs_dynamics.pyx to climt/_components/gfs/_gfs_dynamics.c
  building 'climt._components.gfs._gfs_dynamics' extension
  creating build/temp.linux-x86_64-2.7/climt/_components/gfs
  gcc -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -fPIC -I/home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include -I/tmp/pip-build-k_D69F/climt/climt/_lib/include -I/home/disk/p/mcgibbon/anaconda/include/python2.7 -I/home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include -I/tmp/pip-build-k_D69F/climt/climt/_lib/include -I/home/disk/p/mcgibbon/anaconda/include/python2.7 -c climt/_components/gfs/_gfs_dynamics.c -o build/temp.linux-x86_64-2.7/climt/_components/gfs/_gfs_dynamics.o
  In file included from /home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0,
                   from /home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
                   from /home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                   from climt/_components/gfs/_gfs_dynamics.c:525:
  /home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   #warning "Using deprecated NumPy API, disable it by " \
    ^
  climt/_components/gfs/_gfs_dynamics.c: In function ‘__pyx_array_get_memview’:
  climt/_components/gfs/_gfs_dynamics.c:13216:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
     __pyx_t_2 = __Pyx_PyBool_FromLong(__pyx_v_self->dtype_is_object); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 226, __pyx_L1_error)
     ^
  climt/_components/gfs/_gfs_dynamics.c:13216:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  climt/_components/gfs/_gfs_dynamics.c: In function ‘__pyx_memoryview_is_slice’:
  climt/_components/gfs/_gfs_dynamics.c:15440:9: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
           __pyx_t_7 = __Pyx_PyBool_FromLong(__pyx_v_self->dtype_is_object); if (unlikely(!__pyx_t_7)) __PYX_ERR(2, 426, __pyx_L4_error)
           ^
  climt/_components/gfs/_gfs_dynamics.c:15440:9: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  climt/_components/gfs/_gfs_dynamics.c: In function ‘__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_16is_c_contig’:
  climt/_components/gfs/_gfs_dynamics.c:17873:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
     __pyx_t_1 = __Pyx_PyBool_FromLong(__pyx_memviewslice_is_contig((__pyx_v_mslice[0]), 'C', __pyx_v_self->view.ndim)); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 611, __pyx_L1_error)
     ^
  climt/_components/gfs/_gfs_dynamics.c:17873:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  climt/_components/gfs/_gfs_dynamics.c: In function ‘__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_18is_f_contig’:
  climt/_components/gfs/_gfs_dynamics.c:17944:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
     __pyx_t_1 = __Pyx_PyBool_FromLong(__pyx_memviewslice_is_contig((__pyx_v_mslice[0]), 'F', __pyx_v_self->view.ndim)); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 617, __pyx_L1_error)
     ^
  climt/_components/gfs/_gfs_dynamics.c:17944:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  climt/_components/gfs/_gfs_dynamics.c: In function ‘__pyx_memoryview_new’:
  climt/_components/gfs/_gfs_dynamics.c:18285:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
     __pyx_t_2 = __Pyx_PyBool_FromLong(__pyx_v_dtype_is_object); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 646, __pyx_L1_error)
     ^
  climt/_components/gfs/_gfs_dynamics.c:18285:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  climt/_components/gfs/_gfs_dynamics.c: In function ‘_unellipsify’:
  climt/_components/gfs/_gfs_dynamics.c:18794:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
       __pyx_t_4 = __Pyx_PyBool_FromLong(__pyx_v_have_slices); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 686, __pyx_L1_error)
       ^
  climt/_components/gfs/_gfs_dynamics.c:18794:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  climt/_components/gfs/_gfs_dynamics.c: In function ‘__pyx_memoryview_fromslice’:
  climt/_components/gfs/_gfs_dynamics.c:21203:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
     __pyx_t_2 = __Pyx_PyBool_FromLong(__pyx_v_dtype_is_object); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 1001, __pyx_L1_error)
     ^
  climt/_components/gfs/_gfs_dynamics.c:21203:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  climt/_components/gfs/_gfs_dynamics.c: At top level:
  climt/_components/gfs/_gfs_dynamics.c:2630:13: warning: ‘__pyx_f_5climt_11_components_3gfs_13_gfs_dynamics_testFunc’ defined but not used [-Wunused-function]
   static void __pyx_f_5climt_11_components_3gfs_13_gfs_dynamics_testFunc(void) {
               ^
  climt/_components/gfs/_gfs_dynamics.c:8531:18: warning: ‘__pyx_f_5climt_11_components_3gfs_13_gfs_dynamics_setPhysicsCallback’ defined but not used [-Wunused-function]
   static PyObject *__pyx_f_5climt_11_components_3gfs_13_gfs_dynamics_setPhysicsCallback(PyObject *__pyx_v_physicsFnPtr) {
                    ^
  gcc -pthread -shared -L/home/disk/eos4/mcgibbon/anaconda/lib -Wl,-rpath=/home/disk/eos4/mcgibbon/anaconda/lib,--no-as-needed -fPIC build/temp.linux-x86_64-2.7/climt/_components/gfs/_gfs_dynamics.o -L/tmp/pip-build-k_D69F/climt/climt/_lib/Linux/ -L/home/disk/eos4/mcgibbon/anaconda/lib -lm -lgfortran -lrt -lpython2.7 -o build/lib.linux-x86_64-2.7/climt/_components/gfs/_gfs_dynamics.so -fopenmp /tmp/pip-build-k_D69F/climt/climt/_lib/Linux//libgfs_dycore.a /tmp/pip-build-k_D69F/climt/climt/_lib/Linux//libshtns_omp.a /tmp/pip-build-k_D69F/climt/climt/_lib/Linux//libfftw3_omp.a /tmp/pip-build-k_D69F/climt/climt/_lib/Linux//libfftw3.a /tmp/pip-build-k_D69F/climt/climt/_lib/Linux//libopenblas.a -lgfortran
  gcc: error: /tmp/pip-build-k_D69F/climt/climt/_lib/Linux//libgfs_dycore.a: No such file or directory
  gcc: error: /tmp/pip-build-k_D69F/climt/climt/_lib/Linux//libshtns_omp.a: No such file or directory
  gcc: error: /tmp/pip-build-k_D69F/climt/climt/_lib/Linux//libfftw3_omp.a: No such file or directory
  gcc: error: /tmp/pip-build-k_D69F/climt/climt/_lib/Linux//libfftw3.a: No such file or directory
  gcc: error: /tmp/pip-build-k_D69F/climt/climt/_lib/Linux//libopenblas.a: No such file or directory
  error: command 'gcc' failed with exit status 1
  
  ----------------------------------------
  Running setup.py clean for climt
Failed to build climt
Installing collected packages: climt
  Running setup.py install for climt: started
    Running setup.py install for climt: finished with status 'error'
    Complete output from command /home/disk/p/mcgibbon/anaconda/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-k_D69F/climt/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-9FRilI-record/install-record.txt --single-version-externally-managed --compile:
    running install
    running build
    running build_py
    creating build
    creating build/lib.linux-x86_64-2.7
    creating build/lib.linux-x86_64-2.7/climt
    copying climt/__init__.py -> build/lib.linux-x86_64-2.7/climt
    running egg_info
    writing requirements to climt.egg-info/requires.txt
    writing climt.egg-info/PKG-INFO
    writing top-level names to climt.egg-info/top_level.txt
    writing dependency_links to climt.egg-info/dependency_links.txt
    reading manifest file 'climt.egg-info/SOURCES.txt'
    reading manifest template 'MANIFEST.in'
    warning: no files found matching '*.so' under directory 'climt'
    warning: no files found matching '*.dylib' under directory 'climt'
    no previously-included directories found matching 'climt/_lib/lib'
    no previously-included directories found matching 'climt/_lib/share'
    no previously-included directories found matching 'climt/_lib/include'
    no previously-included directories found matching 'climt/_lib/bin'
    no previously-included directories found matching 'climt/_lib/Open*'
    no previously-included directories found matching 'climt/_lib/shtns*'
    warning: no previously-included files found matching 'climt/_lib/.configured*'
    warning: no previously-included files matching '*.pyc' found under directory 'climt'
    warning: no previously-included files matching '*.mod' found under directory 'climt'
    warning: no previously-included files matching '*.o' found under directory 'climt'
    warning: no previously-included files matching '*.c' found under directory 'climt'
    warning: no previously-included files matching '*.a' found under directory 'climt'
    warning: no previously-included files matching '__pycache__' found under directory '*'
    no previously-included directories found matching 'tests/__pycache__'
    warning: no files found matching '*.jpg' under directory 'docs'
    warning: no files found matching '*.png' under directory 'docs'
    warning: no files found matching '*.gif' under directory 'docs'
    writing manifest file 'climt.egg-info/SOURCES.txt'
    creating build/lib.linux-x86_64-2.7/climt/_components
    copying climt/_components/__init__.py -> build/lib.linux-x86_64-2.7/climt/_components
    copying climt/_components/_berger_solar_insolation.pyx -> build/lib.linux-x86_64-2.7/climt/_components
    copying climt/_components/berger_solar_insolation.py -> build/lib.linux-x86_64-2.7/climt/_components
    copying climt/_components/grid_scale_condensation.py -> build/lib.linux-x86_64-2.7/climt/_components
    copying climt/_components/held_suarez.py -> build/lib.linux-x86_64-2.7/climt/_components
    copying climt/_components/radiation.py -> build/lib.linux-x86_64-2.7/climt/_components
    copying climt/_components/slab_surface.py -> build/lib.linux-x86_64-2.7/climt/_components
    copying climt/_components/surface_ice.py -> build/lib.linux-x86_64-2.7/climt/_components
    creating build/lib.linux-x86_64-2.7/climt/_components/dcmip
    copying climt/_components/dcmip/__init__.py -> build/lib.linux-x86_64-2.7/climt/_components/dcmip
    copying climt/_components/dcmip/_dcmip.pyx -> build/lib.linux-x86_64-2.7/climt/_components/dcmip
    copying climt/_components/dcmip/component.py -> build/lib.linux-x86_64-2.7/climt/_components/dcmip
    creating build/lib.linux-x86_64-2.7/climt/_components/emanuel
    copying climt/_components/emanuel/__init__.py -> build/lib.linux-x86_64-2.7/climt/_components/emanuel
    copying climt/_components/emanuel/_emanuel_convection.pyx -> build/lib.linux-x86_64-2.7/climt/_components/emanuel
    copying climt/_components/emanuel/component.py -> build/lib.linux-x86_64-2.7/climt/_components/emanuel
    creating build/lib.linux-x86_64-2.7/climt/_components/gfs
    copying climt/_components/gfs/__init__.py -> build/lib.linux-x86_64-2.7/climt/_components/gfs
    copying climt/_components/gfs/_gfs_dynamics.pyx -> build/lib.linux-x86_64-2.7/climt/_components/gfs
    copying climt/_components/gfs/component.py -> build/lib.linux-x86_64-2.7/climt/_components/gfs
    creating build/lib.linux-x86_64-2.7/climt/_components/monitors
    copying climt/_components/monitors/__init__.py -> build/lib.linux-x86_64-2.7/climt/_components/monitors
    creating build/lib.linux-x86_64-2.7/climt/_components/rrtmg
    copying climt/_components/rrtmg/__init__.py -> build/lib.linux-x86_64-2.7/climt/_components/rrtmg
    creating build/lib.linux-x86_64-2.7/climt/_components/rrtmg/lw
    copying climt/_components/rrtmg/lw/__init__.py -> build/lib.linux-x86_64-2.7/climt/_components/rrtmg/lw
    copying climt/_components/rrtmg/lw/_rrtm_lw.pyx -> build/lib.linux-x86_64-2.7/climt/_components/rrtmg/lw
    copying climt/_components/rrtmg/lw/component.py -> build/lib.linux-x86_64-2.7/climt/_components/rrtmg/lw
    creating build/lib.linux-x86_64-2.7/climt/_components/rrtmg/sw
    copying climt/_components/rrtmg/sw/__init__.py -> build/lib.linux-x86_64-2.7/climt/_components/rrtmg/sw
    copying climt/_components/rrtmg/sw/_rrtm_sw.pyx -> build/lib.linux-x86_64-2.7/climt/_components/rrtmg/sw
    copying climt/_components/rrtmg/sw/component.py -> build/lib.linux-x86_64-2.7/climt/_components/rrtmg/sw
    creating build/lib.linux-x86_64-2.7/climt/_components/simple_physics
    copying climt/_components/simple_physics/__init__.py -> build/lib.linux-x86_64-2.7/climt/_components/simple_physics
    copying climt/_components/simple_physics/_simple_physics.pyx -> build/lib.linux-x86_64-2.7/climt/_components/simple_physics
    copying climt/_components/simple_physics/component.py -> build/lib.linux-x86_64-2.7/climt/_components/simple_physics
    creating build/lib.linux-x86_64-2.7/climt/_core
    copying climt/_core/__init__.py -> build/lib.linux-x86_64-2.7/climt/_core
    copying climt/_core/climt_components.py -> build/lib.linux-x86_64-2.7/climt/_core
    copying climt/_core/initialization.py -> build/lib.linux-x86_64-2.7/climt/_core
    copying climt/_core/util.py -> build/lib.linux-x86_64-2.7/climt/_core
    creating build/lib.linux-x86_64-2.7/climt/_data
    copying climt/_data/__init__.py -> build/lib.linux-x86_64-2.7/climt/_data
    creating build/lib.linux-x86_64-2.7/climt/_lib
    copying climt/_lib/Makefile -> build/lib.linux-x86_64-2.7/climt/_lib
    copying climt/_lib/OpenBLAS-0.2.19.tar.gz -> build/lib.linux-x86_64-2.7/climt/_lib
    copying climt/_lib/fftw-3.3.6-pl2.tar.gz -> build/lib.linux-x86_64-2.7/climt/_lib
    copying climt/_lib/shtns-2.7-r557.tar.gz -> build/lib.linux-x86_64-2.7/climt/_lib
    creating build/lib.linux-x86_64-2.7/climt/_lib/Darwin
    copying climt/_lib/Darwin/.temp -> build/lib.linux-x86_64-2.7/climt/_lib/Darwin
    creating build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/Makefile -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/Makefile.conf -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/Makefile.conf.gfortran -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/Makefile.conf.ifort -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/driver.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/dyn_finalize.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/dyn_init.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/dyn_run.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/finalize.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/gfs_namelist -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/grid_data.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/init.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/kinds.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/params.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/phy_data.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/phy_data_stub.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/phy_finalize.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/phy_finalize_stub.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/phy_init.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/phy_init_stub.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/phy_run.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/phy_run_hs.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/phy_run_stub.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/physcons.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/pressure_data.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/run.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/semimp_data.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/shtns.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    copying climt/_lib/GFS/spectral_data.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/GFS
    creating build/lib.linux-x86_64-2.7/climt/_lib/Linux
    copying climt/_lib/Linux/.temp -> build/lib.linux-x86_64-2.7/climt/_lib/Linux
    creating build/lib.linux-x86_64-2.7/climt/_lib/dcmip
    copying climt/_lib/dcmip/Makefile -> build/lib.linux-x86_64-2.7/climt/_lib/dcmip
    copying climt/_lib/dcmip/dcmip_initial_conditions_test_1_2_3_v5.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/dcmip
    copying climt/_lib/dcmip/dcmip_initial_conditions_test_4_v3.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/dcmip
    copying climt/_lib/dcmip/dcmip_initial_conditions_test_5_v1.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/dcmip
    creating build/lib.linux-x86_64-2.7/climt/_lib/emanuel
    copying climt/_lib/emanuel/Makefile -> build/lib.linux-x86_64-2.7/climt/_lib/emanuel
    copying climt/_lib/emanuel/convect43c.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/emanuel
    creating build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/Makefile -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/_rrtm_lw.pyx -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/mcica_random_numbers.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/mcica_subcol_gen_lw.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/parkind.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/parrrtm.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_cld.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_con.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_kg01.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_kg02.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_kg03.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_kg04.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_kg05.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_kg06.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_kg07.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_kg08.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_kg09.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_kg10.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_kg11.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_kg12.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_kg13.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_kg14.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_kg15.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_kg16.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_ncpar.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_ref.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_tbl.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_vsn.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrlw_wvn.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrtmg_lw_cldprmc.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrtmg_lw_cldprop.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrtmg_lw_init.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrtmg_lw_k_g.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrtmg_lw_rad.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrtmg_lw_rad.nomcica.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrtmg_lw_read_nc.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrtmg_lw_rtrn.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrtmg_lw_rtrnmc.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrtmg_lw_rtrnmr.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrtmg_lw_setcoef.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/rrtmg_lw_taumol.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    copying climt/_lib/rrtmg_lw/setup.py -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_lw
    creating build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/Makefile -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/README -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/_rrtm_sw.pyx -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/mcica_random_numbers.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/mcica_subcol_gen_sw.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/parkind.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/parrrsw.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_aer.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_cld.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_con.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_kg16.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_kg17.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_kg18.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_kg19.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_kg20.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_kg21.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_kg22.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_kg23.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_kg24.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_kg25.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_kg26.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_kg27.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_kg28.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_kg29.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_ncpar.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_ref.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_tbl.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_vsn.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrsw_wvn.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrtmg_sw_cldprmc.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrtmg_sw_cldprop.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrtmg_sw_init.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrtmg_sw_k_g.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrtmg_sw_rad.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrtmg_sw_rad.nomcica.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrtmg_sw_reftra.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrtmg_sw_setcoef.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrtmg_sw_spcvmc.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrtmg_sw_spcvrt.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrtmg_sw_taumol.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/rrtmg_sw_vrtqdr.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    copying climt/_lib/rrtmg_sw/setup.py -> build/lib.linux-x86_64-2.7/climt/_lib/rrtmg_sw
    creating build/lib.linux-x86_64-2.7/climt/_lib/simple_physics
    copying climt/_lib/simple_physics/Makefile -> build/lib.linux-x86_64-2.7/climt/_lib/simple_physics
    copying climt/_lib/simple_physics/simple_physics_custom.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/simple_physics
    copying climt/_lib/simple_physics/simple_physics_v5_1.f90 -> build/lib.linux-x86_64-2.7/climt/_lib/simple_physics
    running build_ext
    if [ ! -d fftw-3.3.6-pl2 ]; then tar -xvzf fftw-3.3.6-pl2.tar.gz > log 2>&1; fi; cd fftw-3.3.6-pl2; ./configure CFLAGS="-I/tmp/pip-build-k_D69F/climt/climt/_lib -L/tmp/pip-build-k_D69F/climt/climt/_lib/Linux/ -fPIC" LDFLAGS="-L/tmp/pip-build-k_D69F/climt/climt/_lib/Linux/" --prefix=/tmp/pip-build-k_D69F/climt/climt/_lib --enable-openmp --enable-avx --enable-avx2 > log 2>&1 && touch ../.configured_fftw
    make: *** [.configured_fftw] Error 1
    skipping 'climt/_components/_berger_solar_insolation.c' Cython extension (up-to-date)
    building 'climt._components._berger_solar_insolation' extension
    creating build/temp.linux-x86_64-2.7
    creating build/temp.linux-x86_64-2.7/climt
    creating build/temp.linux-x86_64-2.7/climt/_components
    gcc -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -fPIC -I/home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include -I/tmp/pip-build-k_D69F/climt/climt/_lib/include -I/home/disk/p/mcgibbon/anaconda/include/python2.7 -c climt/_components/_berger_solar_insolation.c -o build/temp.linux-x86_64-2.7/climt/_components/_berger_solar_insolation.o
    In file included from /home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0,
                     from /home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
                     from /home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                     from climt/_components/_berger_solar_insolation.c:526:
    /home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
     #warning "Using deprecated NumPy API, disable it by " \
      ^
    climt/_components/_berger_solar_insolation.c: In function ‘__pyx_pw_5climt_11_components_24_berger_solar_insolation_1get_orbital_parameters’:
    climt/_components/_berger_solar_insolation.c:2662:67: warning: ‘__pyx_v_pi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
       __pyx_t_5climt_11_components_24_berger_solar_insolation_DTYPE_t __pyx_v_pi;
                                                                       ^
    gcc -pthread -shared -L/home/disk/eos4/mcgibbon/anaconda/lib -Wl,-rpath=/home/disk/eos4/mcgibbon/anaconda/lib,--no-as-needed -fPIC build/temp.linux-x86_64-2.7/climt/_components/_berger_solar_insolation.o -L/home/disk/eos4/mcgibbon/anaconda/lib -lpython2.7 -o build/lib.linux-x86_64-2.7/climt/_components/_berger_solar_insolation.so
    skipping 'climt/_components/gfs/_gfs_dynamics.c' Cython extension (up-to-date)
    building 'climt._components.gfs._gfs_dynamics' extension
    creating build/temp.linux-x86_64-2.7/climt/_components/gfs
    gcc -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -fPIC -I/home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include -I/tmp/pip-build-k_D69F/climt/climt/_lib/include -I/home/disk/p/mcgibbon/anaconda/include/python2.7 -I/home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include -I/tmp/pip-build-k_D69F/climt/climt/_lib/include -I/home/disk/p/mcgibbon/anaconda/include/python2.7 -c climt/_components/gfs/_gfs_dynamics.c -o build/temp.linux-x86_64-2.7/climt/_components/gfs/_gfs_dynamics.o
    In file included from /home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0,
                     from /home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
                     from /home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                     from climt/_components/gfs/_gfs_dynamics.c:525:
    /home/disk/p/mcgibbon/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
     #warning "Using deprecated NumPy API, disable it by " \
      ^
    climt/_components/gfs/_gfs_dynamics.c: In function ‘__pyx_array_get_memview’:
    climt/_components/gfs/_gfs_dynamics.c:13216:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
       __pyx_t_2 = __Pyx_PyBool_FromLong(__pyx_v_self->dtype_is_object); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 226, __pyx_L1_error)
       ^
    climt/_components/gfs/_gfs_dynamics.c:13216:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    climt/_components/gfs/_gfs_dynamics.c: In function ‘__pyx_memoryview_is_slice’:
    climt/_components/gfs/_gfs_dynamics.c:15440:9: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
             __pyx_t_7 = __Pyx_PyBool_FromLong(__pyx_v_self->dtype_is_object); if (unlikely(!__pyx_t_7)) __PYX_ERR(2, 426, __pyx_L4_error)
             ^
    climt/_components/gfs/_gfs_dynamics.c:15440:9: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    climt/_components/gfs/_gfs_dynamics.c: In function ‘__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_16is_c_contig’:
    climt/_components/gfs/_gfs_dynamics.c:17873:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
       __pyx_t_1 = __Pyx_PyBool_FromLong(__pyx_memviewslice_is_contig((__pyx_v_mslice[0]), 'C', __pyx_v_self->view.ndim)); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 611, __pyx_L1_error)
       ^
    climt/_components/gfs/_gfs_dynamics.c:17873:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    climt/_components/gfs/_gfs_dynamics.c: In function ‘__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_18is_f_contig’:
    climt/_components/gfs/_gfs_dynamics.c:17944:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
       __pyx_t_1 = __Pyx_PyBool_FromLong(__pyx_memviewslice_is_contig((__pyx_v_mslice[0]), 'F', __pyx_v_self->view.ndim)); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 617, __pyx_L1_error)
       ^
    climt/_components/gfs/_gfs_dynamics.c:17944:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    climt/_components/gfs/_gfs_dynamics.c: In function ‘__pyx_memoryview_new’:
    climt/_components/gfs/_gfs_dynamics.c:18285:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
       __pyx_t_2 = __Pyx_PyBool_FromLong(__pyx_v_dtype_is_object); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 646, __pyx_L1_error)
       ^
    climt/_components/gfs/_gfs_dynamics.c:18285:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    climt/_components/gfs/_gfs_dynamics.c: In function ‘_unellipsify’:
    climt/_components/gfs/_gfs_dynamics.c:18794:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
         __pyx_t_4 = __Pyx_PyBool_FromLong(__pyx_v_have_slices); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 686, __pyx_L1_error)
         ^
    climt/_components/gfs/_gfs_dynamics.c:18794:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    climt/_components/gfs/_gfs_dynamics.c: In function ‘__pyx_memoryview_fromslice’:
    climt/_components/gfs/_gfs_dynamics.c:21203:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
       __pyx_t_2 = __Pyx_PyBool_FromLong(__pyx_v_dtype_is_object); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 1001, __pyx_L1_error)
       ^
    climt/_components/gfs/_gfs_dynamics.c:21203:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    climt/_components/gfs/_gfs_dynamics.c: At top level:
    climt/_components/gfs/_gfs_dynamics.c:2630:13: warning: ‘__pyx_f_5climt_11_components_3gfs_13_gfs_dynamics_testFunc’ defined but not used [-Wunused-function]
     static void __pyx_f_5climt_11_components_3gfs_13_gfs_dynamics_testFunc(void) {
                 ^
    climt/_components/gfs/_gfs_dynamics.c:8531:18: warning: ‘__pyx_f_5climt_11_components_3gfs_13_gfs_dynamics_setPhysicsCallback’ defined but not used [-Wunused-function]
     static PyObject *__pyx_f_5climt_11_components_3gfs_13_gfs_dynamics_setPhysicsCallback(PyObject *__pyx_v_physicsFnPtr) {
                      ^
    gcc -pthread -shared -L/home/disk/eos4/mcgibbon/anaconda/lib -Wl,-rpath=/home/disk/eos4/mcgibbon/anaconda/lib,--no-as-needed -fPIC build/temp.linux-x86_64-2.7/climt/_components/gfs/_gfs_dynamics.o -L/tmp/pip-build-k_D69F/climt/climt/_lib/Linux/ -L/home/disk/eos4/mcgibbon/anaconda/lib -lm -lgfortran -lrt -lpython2.7 -o build/lib.linux-x86_64-2.7/climt/_components/gfs/_gfs_dynamics.so -fopenmp /tmp/pip-build-k_D69F/climt/climt/_lib/Linux//libgfs_dycore.a /tmp/pip-build-k_D69F/climt/climt/_lib/Linux//libshtns_omp.a /tmp/pip-build-k_D69F/climt/climt/_lib/Linux//libfftw3_omp.a /tmp/pip-build-k_D69F/climt/climt/_lib/Linux//libfftw3.a /tmp/pip-build-k_D69F/climt/climt/_lib/Linux//libopenblas.a -lgfortran
    gcc: error: /tmp/pip-build-k_D69F/climt/climt/_lib/Linux//libgfs_dycore.a: No such file or directory
    gcc: error: /tmp/pip-build-k_D69F/climt/climt/_lib/Linux//libshtns_omp.a: No such file or directory
    gcc: error: /tmp/pip-build-k_D69F/climt/climt/_lib/Linux//libfftw3_omp.a: No such file or directory
    gcc: error: /tmp/pip-build-k_D69F/climt/climt/_lib/Linux//libfftw3.a: No such file or directory
    gcc: error: /tmp/pip-build-k_D69F/climt/climt/_lib/Linux//libopenblas.a: No such file or directory
    error: command 'gcc' failed with exit status 1
    
    ----------------------------------------