A visual representation of some reference document vs. a target document
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
data
src
.gitignore
LICENSE
README.md
pom.xml
publish_to_s3.sh
sed_update.sh

README.md

ETUDE Viewer

ETUDE Viewer -- a visual representation of some reference document vs. a target document.

Key ETUDE Characteristics:

  • has command-line and GUI flavors
  • converts multiple disparate input formats (e.g., line delimited sentences, inline and offset XML annotations) to a single unified back-end
  • supports configurable extraction options to accommodate new formats
  • ships with configurations for scoring several i2b2 NLP challenges
  • has template configurations for common XML system outputs (e.g., UIMA CAS XMI)
  • offers drag-and-drop creation of evaluation configuration files (i.e., specification of annotation categories and attributes to match and compare)
  • allows file and annotation filtering fast prototyping
  • automagically matches file names between folders
  • supports three grades of overlap matching: exact, partial, and fully-contained
  • generates type frequency counts, a confusion matrix, or evaluation metrics (e.g., true positives, false positives, recall)
  • prints results to screen, file, or both
  • shows side-by-side reference and system annotations in the original document context with easy exploration of matches and errors

Download & Run

Click this link to download a zip file containing the executable.

To run the application, unzip the file and double-click the file named EtudeViewer.jar.