diff --git a/containers/glnexus/Dockerfile b/containers/glnexus/Dockerfile new file mode 100644 index 000000000..38bf1720b --- /dev/null +++ b/containers/glnexus/Dockerfile @@ -0,0 +1,26 @@ +################## BASE IMAGE ###################### + +FROM clinicalgenomics/mip_base:2.1 + +################## METADATA ###################### + +LABEL base_image="clinicalgenomics/mip_base:2.1" +LABEL version="1" +LABEL software="glnexus" +LABEL software.version="1.4.1" +LABEL extra.binaries="glnexus" +LABEL maintainer="Clinical-Genomics/MIP" + +WORKDIR /app + +ENV PATH="/app:${PATH}" + +RUN apt-get update && \ + apt-get install -y --no-install-recommends \ + libc6 \ + ca-certificates + +RUN wget --no-verbose https://github.com/dnanexus-rnd/GLnexus/releases/download/v1.4.1/glnexus_cli + +RUN chmod 700 /app/glnexus_cli + diff --git a/templates/mip_install_config.yaml b/templates/mip_install_config.yaml index 882910a74..09553a1ee 100644 --- a/templates/mip_install_config.yaml +++ b/templates/mip_install_config.yaml @@ -97,7 +97,7 @@ container: glnexus: executable: glnexus_cli: - uri: ghcr.io/dnanexus-rnd/glnexus:v1.4.1 + uri: docker.io/clinicalgenomics/glnexus:v1.4.1 hmtnote: executable: hmtnote: