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MIP_BIND to SINGULARITY_BINDPATH
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ramprasadn committed Nov 27, 2020
1 parent 15f67b2 commit 676494c
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions lib/MIP/File/Format/Vcf.pm
Expand Up @@ -86,7 +86,7 @@ sub get_vcf_header_line_by_id {
## Export MIP_BIND to bind reference path to htslib sif in proxy bin
my @check_header_cmds = gnu_export(
{
bash_variable => q{MIP_BIND}
bash_variable => q{SINGULARITY_BINDPATH}
. $EQUALS
. $vcf_file_path
. $COLON
Expand All @@ -111,7 +111,7 @@ sub get_vcf_header_line_by_id {
push @check_header_cmds, $SEMICOLON;

## Unset MIP_BIND after system parsing
push @check_header_cmds, gnu_unset( { bash_variable => q{MIP_BIND}, } );
push @check_header_cmds, gnu_unset( { bash_variable => q{SINGULARITY_BINDPATH}, } );

my %process_return = child_process(
{
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