From 676494ccb213586464b683e64cfd41eed7618506 Mon Sep 17 00:00:00 2001 From: Ramprasad Neethiraj <20065894+ramprasadn@users.noreply.github.com> Date: Fri, 27 Nov 2020 20:03:44 +0100 Subject: [PATCH] MIP_BIND to SINGULARITY_BINDPATH --- lib/MIP/File/Format/Vcf.pm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/lib/MIP/File/Format/Vcf.pm b/lib/MIP/File/Format/Vcf.pm index 6cc0ce286..87b91ad07 100644 --- a/lib/MIP/File/Format/Vcf.pm +++ b/lib/MIP/File/Format/Vcf.pm @@ -86,7 +86,7 @@ sub get_vcf_header_line_by_id { ## Export MIP_BIND to bind reference path to htslib sif in proxy bin my @check_header_cmds = gnu_export( { - bash_variable => q{MIP_BIND} + bash_variable => q{SINGULARITY_BINDPATH} . $EQUALS . $vcf_file_path . $COLON @@ -111,7 +111,7 @@ sub get_vcf_header_line_by_id { push @check_header_cmds, $SEMICOLON; ## Unset MIP_BIND after system parsing - push @check_header_cmds, gnu_unset( { bash_variable => q{MIP_BIND}, } ); + push @check_header_cmds, gnu_unset( { bash_variable => q{SINGULARITY_BINDPATH}, } ); my %process_return = child_process( {