From d59bcfc4a05352cddf4a5cf961a285c2365ae51f Mon Sep 17 00:00:00 2001 From: Alexander Peltzer Date: Thu, 28 Oct 2021 11:54:28 +0200 Subject: [PATCH] Its human, not sarscov2 --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 68fae452544..468a024cf3e 100644 --- a/README.md +++ b/README.md @@ -58,7 +58,6 @@ If you cannot find suitable test data on this repository, please contact us on t * 'test.paired_end.name.sorted.bam': Paired-end bam file sorted by name * 'test.single_end.bam': alignment (unsorted) of the 'test_1.fastq.gz' reads against test_genomic.fasta using minimap2 * 'test.unaligned.bam': unmapped BAM file created from 'test_1.fastq.gz' using GATK4 SamToFastq - * 'example_hla_pe.bam': Downsampled BAM file for HLATyping workflow / OptiType module. Using existing data did not work as it misses preparation steps. * bedgraph * 'test.bedgraph' * bigwig @@ -124,6 +123,7 @@ If you cannot find suitable test data on this repository, please contact us on t * test2.paired_end.sorted: Mapped, and sorted reads based on `test2{,.umi}_{1,2}` (tumor) * test2.paired_end.markduplicates.sorted: Mapped, sorted, and duplicate marked reads based on `test2{,.umi}_{1,2}` (tumor) * test2.paired_end.recalibrated.sorted: Mapped, sorted, duplicate marked, and recalibrated reads based on `test2{,.umi}_{1,2}` (tumor) + * 'example_hla_pe.bam': Downsampled BAM file for HLATyping workflow / OptiType module. Using existing data did not work as it misses preparation steps. * umi: * test.paired_end.umi_*: Files base on `test.umi_{1,2}` (normal) * test2.paired_end.umi_*: Files base on `test2.umi_{1,2}` (tumor)