From 4b66bd37cbf44607b3dab8c6df1e375e7a93a6bd Mon Sep 17 00:00:00 2001 From: Brandon Lind Date: Sat, 20 Jun 2020 14:38:34 -0700 Subject: [PATCH] Update README.md --- README.md | 1 - 1 file changed, 1 deletion(-) diff --git a/README.md b/README.md index ef35341..0421647 100644 --- a/README.md +++ b/README.md @@ -36,7 +36,6 @@ Workflow features Final file output by pipeline - The final file will be of the form f'{pool_name}-varscan_all_bedfiles_TYPE.txt', where TYPE is one of SNP +/- PARALOGS, or REPEATS, depending on input flags to 00_start-pipeline. -- In these final files, if a SNP is filtered for a specific population, the entry for the SNP's pop.FREQ column will be NA (numpy.nan). This was most computationatlly efficient (instead of putting numpy.nan on the other pop columns for that SNP). So keep this in mind when using data downstream. ## Assumed environment