Skip to content
Permalink
Browse files

EXC: fix reference

  • Loading branch information...
nno committed Jul 26, 2019
1 parent a939f69 commit db537391a1ca3e586cea48188c7b99136560f95a
Showing with 4 additions and 4 deletions.
  1. +2 −2 doc/source/ex_surface_searchlight.rst
  2. +2 −2 examples/run_surface_searchlight.m
@@ -9,7 +9,7 @@ Surface-based fMRI searchlight
Reading material
----------------

- :cite:`OWDD11`: One of the early papers using a surface-based searchlight, with comparison between volumetric and surface-based searchlight..
- :cite:`OWD+11`: One of the early papers using a surface-based searchlight, with comparison between volumetric and surface-based searchlight.

Required toolboxes
------------------
@@ -31,7 +31,7 @@ Part 1 (cortical thickness)
---------------------------
Load the anatomical surface models for the outer (pial) and inner (white) surfaces that separate the grey matter from non-gray matter. Compute, for each node on the surface, the cortical thickness, and then plot the thickness on a 3D surface model.

Part 2 (Classificiation analysis)
Part 2 (Classification analysis)
---------------------------------
Load the anatomical surface models and the functional data.
Define a surface-based neighborhood with approximately 100 voxels per searchlight center. Then run the searchlight with a classifier to distinguish between the different digit presses and visualize the results.
@@ -121,7 +121,7 @@
xlabel('thickness (mm)');
% <@@<

%% For visualization purposed, read inflated surface
%% For visualization purposes, read inflated surface
inflated_fn=fullfile(digit_study_path,...
sprintf('ico%d_mh.inflated_alCoMmedial.asc', surface_ld));
[infl_v,infl_f]=surfing_read(inflated_fn);
@@ -175,7 +175,7 @@
output_fn=fullfile(config.output_data_path,'thickness.niml.dset');
cosmo_map2surface(ds_thickness,output_fn);

%% Part 3: run surface-based searchlight
%% Part 2: run surface-based searchlight

% Load volumetric functional data
data_path=digit_study_path;

0 comments on commit db53739

Please sign in to comment.
You can’t perform that action at this time.