diff --git a/.Rbuildignore b/.Rbuildignore index d25206e..7a2aa03 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -12,6 +12,7 @@ ^\.pre-commit-config.yaml$ ^\.travis\.yml$ ^\.vscode$ +^codecov\.yml$ ^codemeta\.json$ ^data-raw$ ^doc$ diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml index d86c830..3f3e7e2 100644 --- a/.github/workflows/test-coverage.yaml +++ b/.github/workflows/test-coverage.yaml @@ -2,9 +2,9 @@ # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help on: push: - branches: [main, master] + branches: [main, master, devel] pull_request: - branches: [main, master] + branches: [main, master, devel] name: test-coverage diff --git a/README.Rmd b/README.Rmd index 5750727..b4b3ee2 100644 --- a/README.Rmd +++ b/README.Rmd @@ -19,11 +19,10 @@ knitr::opts_chunk$set( # nolint: extraction_operator_linter. [![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental) [![Continuous Integration / R Workflows](https://github.com/CogDisResLab/drugfindR/actions/workflows/rworkflows.yml/badge.svg)](https://github.com/CogDisResLab/drugfindR/actions/workflows/rworkflows.yml) -[![codecov](https://codecov.io/gh/CogDisResLab/drugfindR/branch/main/graph/badge.svg?token=FeAvIeTAiz)](https://codecov.io/gh/CogDisResLab/drugfindR) -[![latest-version](https://img.shields.io/badge/dynamic/json?url=https%3A%2F%2Fcogdisreslab.r-universe.dev%2Fapi%2Fpackages%2FdrugfindR&query=%24.Version&style=flat&label=latest-release&color=orange)] +[![latest-version](https://img.shields.io/badge/dynamic/json?url=https%3A%2F%2Fcogdisreslab.r-universe.dev%2Fapi%2Fpackages%2FdrugfindR&query=%24.Version&style=flat&label=latest-release&color=orange)](https://github.com/CogDisResLab/drugfindR/releases/latest) [![license](https://img.shields.io/github/license/CogDisResLab/drugfindR)](https://github.com/CogDisResLab/drugfindR/blob/main/LICENSE) - [![DOI](https://zenodo.org/badge/338354715.svg)](https://zenodo.org/badge/latestdoi/338354715) +[![Codecov test coverage](https://codecov.io/gh/CogDisResLab/drugfindR/branch/devel/graph/badge.svg)](https://app.codecov.io/gh/CogDisResLab/drugfindR?branch=devel) drugfindR allows convenient access to the iLINCS Gene Knockdown, Gene Overexpression and Chemical Perturbagen databases and allows you to generate and investigate signatures to identify relevant genes and drugs. diff --git a/README.md b/README.md index e208aff..ae1514e 100644 --- a/README.md +++ b/README.md @@ -10,11 +10,11 @@ experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](h [![Continuous Integration / R Workflows](https://github.com/CogDisResLab/drugfindR/actions/workflows/rworkflows.yml/badge.svg)](https://github.com/CogDisResLab/drugfindR/actions/workflows/rworkflows.yml) -[![codecov](https://codecov.io/gh/CogDisResLab/drugfindR/branch/main/graph/badge.svg?token=FeAvIeTAiz)](https://codecov.io/gh/CogDisResLab/drugfindR) -\[![latest-version](https://img.shields.io/badge/dynamic/json?url=https%3A%2F%2Fcogdisreslab.r-universe.dev%2Fapi%2Fpackages%2FdrugfindR&query=%24.Version&style=flat&label=latest-release&color=orange)\] +[![latest-version](https://img.shields.io/badge/dynamic/json?url=https%3A%2F%2Fcogdisreslab.r-universe.dev%2Fapi%2Fpackages%2FdrugfindR&query=%24.Version&style=flat&label=latest-release&color=orange)](https://github.com/CogDisResLab/drugfindR/releases/latest) [![license](https://img.shields.io/github/license/CogDisResLab/drugfindR)](https://github.com/CogDisResLab/drugfindR/blob/main/LICENSE) - [![DOI](https://zenodo.org/badge/338354715.svg)](https://zenodo.org/badge/latestdoi/338354715) +[![Codecov test +coverage](https://codecov.io/gh/CogDisResLab/drugfindR/branch/devel/graph/badge.svg)](https://app.codecov.io/gh/CogDisResLab/drugfindR?branch=devel) drugfindR allows convenient access to the iLINCS Gene Knockdown, Gene diff --git a/codecov.yml b/codecov.yml new file mode 100644 index 0000000..04c5585 --- /dev/null +++ b/codecov.yml @@ -0,0 +1,14 @@ +comment: false + +coverage: + status: + project: + default: + target: auto + threshold: 1% + informational: true + patch: + default: + target: auto + threshold: 1% + informational: true