diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml index 6f54c000c..fa558a692 100644 --- a/.github/workflows/codeql.yml +++ b/.github/workflows/codeql.yml @@ -59,7 +59,7 @@ jobs: # your codebase is analyzed, see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/codeql-code-scanning-for-compiled-languages steps: - name: Checkout repository - uses: actions/checkout@v5 + uses: actions/checkout@v6 # Add any setup steps before running the `github/codeql-action/init` action. # This includes steps like installing compilers or runtimes (`actions/setup-node` diff --git a/.github/workflows/cogstack-es_main.yml b/.github/workflows/cogstack-es_main.yml index 0d82cfe9a..f154b6cef 100644 --- a/.github/workflows/cogstack-es_main.yml +++ b/.github/workflows/cogstack-es_main.yml @@ -26,7 +26,7 @@ jobs: max-parallel: 4 steps: - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - name: Set up Python ${{ matrix.python-version }} uses: actions/setup-python@v6 with: @@ -51,7 +51,7 @@ jobs: max-parallel: 4 steps: - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - name: Set up Python ${{ matrix.python-version }} uses: actions/setup-python@v6 with: @@ -72,7 +72,7 @@ jobs: needs: types-lint-tests steps: - name: Checkout main - uses: actions/checkout@v5 + uses: actions/checkout@v6 with: fetch-depth: 0 # fetch all history fetch-tags: true # fetch tags explicitly diff --git a/.github/workflows/cogstack-es_release.yml b/.github/workflows/cogstack-es_release.yml index f4d00acf7..0ef22974c 100644 --- a/.github/workflows/cogstack-es_release.yml +++ b/.github/workflows/cogstack-es_release.yml @@ -17,7 +17,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout main - uses: actions/checkout@v5 + uses: actions/checkout@v6 - name: Release Tag # If GITHUB_REF=refs/tags/cogstack-es/v0.1.2, this returns v0.1.2. Note it's including the "v" though it probably shouldnt diff --git a/.github/workflows/medcat-demo-app_build.yml b/.github/workflows/medcat-demo-app_build.yml index 532c25b22..22be8f88b 100644 --- a/.github/workflows/medcat-demo-app_build.yml +++ b/.github/workflows/medcat-demo-app_build.yml @@ -19,7 +19,7 @@ jobs: MEDCAT_BRANCH: ${{ github.head_ref || github.ref_name }} steps: - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - name: 🧹 Free up disk space run: | diff --git a/.github/workflows/medcat-den_main.yml b/.github/workflows/medcat-den_main.yml index 82740ec15..be6066023 100644 --- a/.github/workflows/medcat-den_main.yml +++ b/.github/workflows/medcat-den_main.yml @@ -23,7 +23,7 @@ jobs: python-version: [ '3.10', '3.11', '3.12' ] max-parallel: 4 steps: - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - name: Install uv for Python ${{ matrix.python-version }} uses: astral-sh/setup-uv@v7 with: @@ -49,7 +49,7 @@ jobs: needs: build steps: - name: Checkout main - uses: actions/checkout@v5 + uses: actions/checkout@v6 with: fetch-depth: 0 # fetch all history fetch-tags: true # fetch tags explicitly diff --git a/.github/workflows/medcat-den_release.yml b/.github/workflows/medcat-den_release.yml index b4e411c64..5378b6674 100644 --- a/.github/workflows/medcat-den_release.yml +++ b/.github/workflows/medcat-den_release.yml @@ -17,7 +17,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout main - uses: actions/checkout@v5 + uses: actions/checkout@v6 - name: Release Tag # If GITHUB_REF=refs/tags/medcat-den/v0.1.2, this returns v0.1.2. Note it's including the "v" though it probably shouldnt diff --git a/.github/workflows/medcat-scripts_main.yml b/.github/workflows/medcat-scripts_main.yml index 0f01fe5df..d8f083e34 100644 --- a/.github/workflows/medcat-scripts_main.yml +++ b/.github/workflows/medcat-scripts_main.yml @@ -22,7 +22,7 @@ jobs: python-version: [ '3.10', '3.11', '3.12', '3.13' ] max-parallel: 4 steps: - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - name: Install uv for Python ${{ matrix.python-version }} uses: astral-sh/setup-uv@v7 with: diff --git a/.github/workflows/medcat-service_docker.yml b/.github/workflows/medcat-service_docker.yml index 079e8d8ac..0661eaff7 100644 --- a/.github/workflows/medcat-service_docker.yml +++ b/.github/workflows/medcat-service_docker.yml @@ -24,7 +24,7 @@ jobs: image_version: ${{ steps.meta.outputs.version }} steps: - name: Checkout - uses: actions/checkout@v5 + uses: actions/checkout@v6 - name: 🧹 Free up disk space run: | @@ -131,7 +131,7 @@ jobs: steps: - name: Check out code - uses: actions/checkout@v5 + uses: actions/checkout@v6 - name: Run Test with example model pack run: | diff --git a/.github/workflows/medcat-service_run-tests.yml b/.github/workflows/medcat-service_run-tests.yml index 8663d31b2..e9d672995 100644 --- a/.github/workflows/medcat-service_run-tests.yml +++ b/.github/workflows/medcat-service_run-tests.yml @@ -18,7 +18,7 @@ jobs: runs-on: ubuntu-latest steps: - name: checkout repo - uses: actions/checkout@v5 + uses: actions/checkout@v6 - name: Cache MedMen Model id: cache-medmen diff --git a/.github/workflows/medcat-trainer-v1_ci.yml b/.github/workflows/medcat-trainer-v1_ci.yml index a6a25521d..b29ca5016 100644 --- a/.github/workflows/medcat-trainer-v1_ci.yml +++ b/.github/workflows/medcat-trainer-v1_ci.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout main - uses: actions/checkout@v5 + uses: actions/checkout@v6 with: ref: ${{ github.ref }} diff --git a/.github/workflows/medcat-trainer-v1_qa.yml b/.github/workflows/medcat-trainer-v1_qa.yml index 610723226..7ea4015a3 100644 --- a/.github/workflows/medcat-trainer-v1_qa.yml +++ b/.github/workflows/medcat-trainer-v1_qa.yml @@ -14,7 +14,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout main - uses: actions/checkout@v5 + uses: actions/checkout@v6 with: ref: 'main' diff --git a/.github/workflows/medcat-trainer-v1_release.yml b/.github/workflows/medcat-trainer-v1_release.yml index d975d8d9c..ce8120b0f 100644 --- a/.github/workflows/medcat-trainer-v1_release.yml +++ b/.github/workflows/medcat-trainer-v1_release.yml @@ -15,7 +15,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout main - uses: actions/checkout@v5 + uses: actions/checkout@v6 with: ref: "main" diff --git a/.github/workflows/medcat-trainer_ci.yml b/.github/workflows/medcat-trainer_ci.yml index 8e11de07c..f4037c760 100644 --- a/.github/workflows/medcat-trainer_ci.yml +++ b/.github/workflows/medcat-trainer_ci.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout main - uses: actions/checkout@v5 + uses: actions/checkout@v6 with: ref: ${{ github.ref }} @@ -49,7 +49,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout main - uses: actions/checkout@v5 + uses: actions/checkout@v6 - name: Set up Node.js uses: actions/setup-node@v6 @@ -70,7 +70,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout main - uses: actions/checkout@v5 + uses: actions/checkout@v6 with: ref: ${{ github.ref }} @@ -117,7 +117,7 @@ jobs: - test-backend steps: - name: Checkout main - uses: actions/checkout@v5 + uses: actions/checkout@v6 with: ref: ${{ github.ref }} diff --git a/.github/workflows/medcat-trainer_qa.yml b/.github/workflows/medcat-trainer_qa.yml index e90579a1f..55705f211 100644 --- a/.github/workflows/medcat-trainer_qa.yml +++ b/.github/workflows/medcat-trainer_qa.yml @@ -17,7 +17,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout main - uses: actions/checkout@v5 + uses: actions/checkout@v6 with: ref: "main" @@ -59,7 +59,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout main - uses: actions/checkout@v5 + uses: actions/checkout@v6 - name: Set up Node.js uses: actions/setup-node@v6 @@ -80,7 +80,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout main - uses: actions/checkout@v5 + uses: actions/checkout@v6 with: ref: "main" @@ -127,7 +127,7 @@ jobs: - test-backend steps: - name: Checkout main - uses: actions/checkout@v5 + uses: actions/checkout@v6 with: ref: "main" diff --git a/.github/workflows/medcat-trainer_release.yml b/.github/workflows/medcat-trainer_release.yml index 49afac561..4ffa7c3e1 100644 --- a/.github/workflows/medcat-trainer_release.yml +++ b/.github/workflows/medcat-trainer_release.yml @@ -18,7 +18,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout main - uses: actions/checkout@v5 + uses: actions/checkout@v6 with: ref: "main" @@ -61,7 +61,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout main - uses: actions/checkout@v5 + uses: actions/checkout@v6 with: ref: "main" @@ -84,7 +84,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout main - uses: actions/checkout@v5 + uses: actions/checkout@v6 with: ref: "main" @@ -131,7 +131,7 @@ jobs: - test-backend steps: - name: Checkout main - uses: actions/checkout@v5 + uses: actions/checkout@v6 with: ref: "main" diff --git a/.github/workflows/medcat-v1-tutorials_main.yml b/.github/workflows/medcat-v1-tutorials_main.yml index bcb6f437a..25bf32479 100644 --- a/.github/workflows/medcat-v1-tutorials_main.yml +++ b/.github/workflows/medcat-v1-tutorials_main.yml @@ -31,7 +31,7 @@ jobs: ] steps: - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - name: Setup Python uses: actions/setup-python@v6 with: diff --git a/.github/workflows/medcat-v1_main.yml b/.github/workflows/medcat-v1_main.yml index 158c31eb1..3368799cc 100644 --- a/.github/workflows/medcat-v1_main.yml +++ b/.github/workflows/medcat-v1_main.yml @@ -20,7 +20,7 @@ jobs: max-parallel: 4 steps: - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - name: Set up Python ${{ matrix.python-version }} uses: actions/setup-python@v6 with: @@ -89,7 +89,7 @@ jobs: steps: - name: Checkout main - uses: actions/checkout@v5 + uses: actions/checkout@v6 with: ref: 'main' fetch-depth: 0 diff --git a/.github/workflows/medcat-v1_production.yml b/.github/workflows/medcat-v1_production.yml index 508ca1360..9d8254c16 100644 --- a/.github/workflows/medcat-v1_production.yml +++ b/.github/workflows/medcat-v1_production.yml @@ -24,7 +24,7 @@ jobs: steps: - name: Checkout production - uses: actions/checkout@v5 + uses: actions/checkout@v6 with: ref: ${{ github.event.release.target_commitish }} fetch-depth: 0 diff --git a/.github/workflows/medcat-v2-lib-stability.yml b/.github/workflows/medcat-v2-lib-stability.yml index 5d8b07f23..f9a37d33a 100644 --- a/.github/workflows/medcat-v2-lib-stability.yml +++ b/.github/workflows/medcat-v2-lib-stability.yml @@ -24,7 +24,7 @@ jobs: python-version: [ "3.10", "3.11", "3.12", "3.13"] steps: - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - uses: astral-sh/setup-uv@v7 with: python-version: ${{ matrix.python-version }} diff --git a/.github/workflows/medcat-v2-tutorials_main.yml b/.github/workflows/medcat-v2-tutorials_main.yml index 3c0203bc1..a2b92fd4c 100644 --- a/.github/workflows/medcat-v2-tutorials_main.yml +++ b/.github/workflows/medcat-v2-tutorials_main.yml @@ -17,7 +17,7 @@ jobs: basic-and-meta: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - name: Setup Python uses: actions/setup-python@v6 with: @@ -61,7 +61,7 @@ jobs: ] steps: - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - name: Setup Python uses: actions/setup-python@v6 with: diff --git a/.github/workflows/medcat-v2_main.yml b/.github/workflows/medcat-v2_main.yml index 6b2a510a3..7faeff920 100644 --- a/.github/workflows/medcat-v2_main.yml +++ b/.github/workflows/medcat-v2_main.yml @@ -18,7 +18,7 @@ jobs: python-version: [ '3.10', '3.11', '3.12', '3.13' ] max-parallel: 5 steps: - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - name: Install uv for Python ${{ matrix.python-version }} uses: astral-sh/setup-uv@v7 with: diff --git a/.github/workflows/medcat-v2_release.yml b/.github/workflows/medcat-v2_release.yml index 6f1d0dcc1..1d57d5d1e 100644 --- a/.github/workflows/medcat-v2_release.yml +++ b/.github/workflows/medcat-v2_release.yml @@ -23,7 +23,7 @@ jobs: version_only: ${{ steps.extract.outputs.version_only }} steps: - name: Checkout repository - uses: actions/checkout@v5 + uses: actions/checkout@v6 with: fetch-depth: 0 @@ -80,7 +80,7 @@ jobs: python-version: ["3.10", "3.11", "3.12"] steps: - name: Checkout repository - uses: actions/checkout@v5 + uses: actions/checkout@v6 - name: Set up Python ${{ matrix.python-version }} uses: actions/setup-python@v6