diff --git a/medcat-v2/.media/cat-logo.png b/medcat-v2/.media/cat-logo.png new file mode 100644 index 00000000..56b7971b Binary files /dev/null and b/medcat-v2/.media/cat-logo.png differ diff --git a/medcat-v2/.media/cat-logo.svg b/medcat-v2/.media/cat-logo.svg new file mode 100644 index 00000000..df6a04d4 --- /dev/null +++ b/medcat-v2/.media/cat-logo.svg @@ -0,0 +1,73 @@ + + + + + + + + + + + + + + + + diff --git a/medcat-v2/README.md b/medcat-v2/README.md index 353d5051..807bc56e 100644 --- a/medcat-v2/README.md +++ b/medcat-v2/README.md @@ -1,11 +1,11 @@ -# Medical oncept Annotation Tool (version 2) +# Medical oncept Annotation Tool (version 2) **There's a number of breaking changes in MedCAT v2 compared to v1.** Details are outlined [here](docs/breaking_changes.md). -[![Build Status](https://github.com/CogStack/MedCAT2/actions/workflows/main.yml/badge.svg?branch=main)](https://github.com/CogStack/MedCAT2/actions/workflows/main.yml?query=branch%3main) +[![Build Status](https://github.com/CogStack/cogstack-nlp/actions/workflows/medcat-v2_main.yml/badge.svg?branch=main)](https://github.com/CogStack/cogstack-nlp/actions/workflows/medcat-v2_main.yml?query=branch%3main) [![Documentation Status](https://readthedocs.org/projects/medcat2/badge/?version=latest)](https://medcat2.readthedocs.io/en/latest/?badge=latest) -[![Latest release](https://img.shields.io/github/v/release/CogStack/MedCAT2)](https://github.com/CogStack/MedCAT2/releases/latest) +[![Latest release](https://img.shields.io/github/v/release/CogStack/cogstack-nlp)](https://github.com/CogStack/cogstack-nlp/releases/latest) MedCAT can be used to extract information from Electronic Health Records (EHRs) and link it to biomedical ontologies like SNOMED-CT, UMLS, or HPO (and potentially other ontologies). diff --git a/medcat-v2/docs/conf.py b/medcat-v2/docs/conf.py index eec3ab9b..f4b9d02e 100644 --- a/medcat-v2/docs/conf.py +++ b/medcat-v2/docs/conf.py @@ -75,7 +75,7 @@ 'css/overrides.css' ] -html_logo = '../media/cat-logo.svg' +html_logo = '../.media/cat-logo.svg' html_theme_options = { 'display_version': True, diff --git a/medcat-v2/docs/main.md b/medcat-v2/docs/main.md index 960282da..afbb2272 100644 --- a/medcat-v2/docs/main.md +++ b/medcat-v2/docs/main.md @@ -1,12 +1,12 @@ -# Medical oncept Annotation Tool (v2) +# Medical oncept Annotation Tool (v2) **There's a number of breaking changes in MedCAT v2 compared to v1.** Details are outlined [here](breaking_changes.md). [![Build Status](https://github.com/CogStack/cogstack-nlp/actions/workflows/medcat-v2_main.yml)](https://github.com/CogStack/cogstack-nlp/actions/workflows/medcat-v2_main.yml) [![Documentation Status](https://readthedocs.org/projects/medcat2/badge/?version=latest)](https://medcat2.readthedocs.io/en/latest/?badge=latest) -[![Latest release](https://img.shields.io/github/v/release/CogStack/MedCAT2)](https://github.com/CogStack/MedCAT2/releases/latest) -[![pypi Version](https://img.shields.io/pypi/v/medcat.svg?style=flat-square&logo=pypi&logoColor=white)](https://pypi.org/project/medcat/) +[![Latest release](https://img.shields.io/github/v/release/CogStack/cogstack-nlp)](https://github.com/CogStack/cogstack-nlp/releases/latest) + MedCAT(*v2*) can be used to extract information from Electronic Health Records (EHRs) and link it to biomedical ontologies like SNOMED-CT and UMLS. Paper on [arXiv](https://arxiv.org/abs/2010.01165).