futz with deltamax comp to make a little more forgiving

ComparativeGenomicsToolkit · Jun 4, 2013 · 287f827 · 287f827
1 parent 0b32bab
commit 287f827
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/lod/impl/halLodGraph.cpp b/lod/impl/halLodGraph.cpp
@@ -189,7 +189,8 @@ bool LodGraph::canAddColumn(ColumnIteratorConstPtr colIt)
   if (canAdd == true && refPos != 0 && (hal_size_t)refPos !=
       colIt->getReferenceSequence()->getSequenceLength() - 1)
   {
-    canAdd = deltaMax > _step;
+    // .75 to bias a little against gaps
+    canAdd = deltaMax > _step *.75;
   }
   return canAdd;
 }