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Commits on Dec 3, 2012
  1. update doc

    glennhickey committed Dec 3, 2012
  2. update doc

    glennhickey committed Dec 3, 2012
  3. update doc

    glennhickey committed Dec 3, 2012
Commits on Nov 30, 2012
  1. do inversions in mafMutaions

    glennhickey committed Nov 30, 2012
  2. fix root leaves bug

    glennhickey committed Nov 30, 2012
Commits on Nov 29, 2012
  1. remove couts, fix cases

    glennhickey committed Nov 29, 2012
Commits on Nov 28, 2012
  1. use copy method to clone h5proplists since copy constructor and ass o…

    …perator do it by reference. scale dna and bottom chunks to have similar size to top chunks. etc
    glennhickey committed Nov 28, 2012
  2. fix typo

    glennhickey committed Nov 28, 2012
  3. tweak

    glennhickey committed Nov 28, 2012
Commits on Nov 27, 2012
  1. add write options

    glennhickey committed Nov 27, 2012
  2. fix halExtract

    glennhickey committed Nov 27, 2012
  3. fix typo in getparalogyindex

    glennhickey committed Nov 27, 2012
  4. typos

    glennhickey committed Nov 27, 2012
  5. fill in halExtract code

    glennhickey committed Nov 27, 2012
  6. fill in halExtract code

    glennhickey committed Nov 27, 2012
  7. start adding quick tool to extract subtree from one hal file into its…

    … own file. to help with benchmarking
    glennhickey committed Nov 27, 2012
Commits on Nov 21, 2012
  1. bigger api doc link

    glennhickey committed Nov 21, 2012
  2. update html manual

    glennhickey committed Nov 21, 2012
  3. change api manual to github

    glennhickey committed Nov 21, 2012
Commits on Nov 19, 2012
Commits on Nov 16, 2012
  1. bug in options in halstats

    glennhickey committed Nov 16, 2012
Commits on Nov 15, 2012
Commits on Nov 14, 2012
  1. fix bug in last commit

    glennhickey committed Nov 14, 2012
Commits on Nov 9, 2012