Permalink
Commits on Apr 17, 2013
  1. add check for unrecognized option without parameter. cant believe tha…

    glennhickey committed Apr 17, 2013
    …t was missing until now
Commits on Apr 16, 2013
  1. Add inMemory option to hdf5 alignment interface. this option will sto…

    glennhickey committed Apr 16, 2013
    …re all arrays entirely in memory and disable the hdf5 cache.
  2. add some includes and namespaces specifications to make compiler happ…

    glennhickey committed Apr 16, 2013
    …y in progressive cactus
  3. lower default maxblock

    glennhickey committed Apr 16, 2013
  4. fix option type

    glennhickey committed Apr 16, 2013
  5. fix typo in assert

    glennhickey committed Apr 16, 2013
Commits on Apr 15, 2013
  1. add support for creating hals without sequence arrays. any tool that …

    glennhickey committed Apr 15, 2013
    …trys to access dna data from these files will still hit an exception
Commits on Apr 14, 2013
  1. fix to keep sequence ordering in output genome. this is critical sinc…

    glennhickey committed Apr 14, 2013
    …e we use genome coordinates throught the conversion
Commits on Apr 13, 2013
  1. fix typo in printtable

    glennhickey committed Apr 13, 2013
Commits on Apr 12, 2013
  1. dug

    glennhickey committed Apr 12, 2013
  2. fix typo

    glennhickey committed Apr 12, 2013