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Commits on Oct 23, 2012
  1. rename cons to mutations

    glennhickey committed Oct 23, 2012
Commits on Oct 22, 2012
Commits on Oct 19, 2012
  1. blarg

    glennhickey committed Oct 19, 2012
  2. assert revisited

    glennhickey committed Oct 19, 2012
  3. detect and skip duplicate mentions of non-reference sequence. these a…

    …re implicit paralogies that we can't represent with transitive closure which is beyond scope of this tool
    glennhickey committed Oct 19, 2012
Commits on Oct 18, 2012
  1. dont init enitre database at the beginning. it messes with hdf5 and w…

    …astes time. we add pass at the end to init all unwritten segments
    glennhickey committed Oct 18, 2012
Commits on Oct 17, 2012
  1. add cout

    glennhickey committed Oct 17, 2012
  2. turn default cache size from 50M down to 15M. better suited for deskt…

    …op where i run most tests. should remember to crank it on kkolossus
    glennhickey committed Oct 17, 2012
  3. stupid compiler warning

    glennhickey committed Oct 17, 2012
  4. print some stats to stdout during maf conversion. play around with de…

    …fault hdf5 cache (larger)
    glennhickey committed Oct 17, 2012
  5. slight teak to setCharacter

    glennhickey committed Oct 17, 2012
Commits on Oct 16, 2012
  1. boost chunk size of dna arrays to 32x. increase default chunk size to…

    … reflect smaller segments from 2500 to 3500. fix reverse complement of strings. tweak dna iterator inteface
    glennhickey committed Oct 16, 2012
  2. fix mixup in last checking

    glennhickey committed Oct 16, 2012
Commits on Oct 15, 2012
  1. fix some bugs in maf import

    glennhickey committed Oct 15, 2012
  2. better initializing

    glennhickey committed Oct 15, 2012
  3. not done yet

    glennhickey committed Oct 15, 2012
Commits on Oct 14, 2012
  1. oops

    glennhickey committed Oct 14, 2012
Commits on Oct 13, 2012
  1. Start work on maf2hal

    glennhickey committed Oct 13, 2012