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Commits on Apr 20, 2013
  1. fix case for sliced segments in mapper ordering. should be very fring…

    glennhickey committed Apr 20, 2013
    …e but need it for the unit tests
Commits on Apr 19, 2013
  1. Mody lodmanager to be sensitive to which lods have sequence or not. b…

    glennhickey committed Apr 19, 2013
    …lockviz api adjusted to always look for the best LOD with sequence when the getsequenceflag is provdied
  2. change keepSequences to maxDNA option to allow more finegrained contr…

    glennhickey committed Apr 19, 2013
    …ol of which levels of detail get a sequence
  3. Add transitive option to make levels of detail from previous levels o…

    glennhickey committed Apr 19, 2013
    …f detail instead of original
  4. Change extend heuristic

    glennhickey committed Apr 19, 2013
  5. sort blocks from biggest to smallest (in terms of their segment count…

    glennhickey committed Apr 19, 2013
    …s) before doing greedy extend)
Commits on Apr 18, 2013
  1. Specify path conevntion for LOD files. Relative paths of HAL files ar…

    glennhickey committed Apr 18, 2013
    …e assumed to be relative to the directory of the LOD file. Absolute paths are unchanged.
Commits on Apr 17, 2013
  1. fix indent

    glennhickey committed Apr 17, 2013
  2. add check for unrecognized option without parameter. cant believe tha…

    glennhickey committed Apr 17, 2013
    …t was missing until now
Commits on Apr 16, 2013
  1. Add inMemory option to hdf5 alignment interface. this option will sto…

    glennhickey committed Apr 16, 2013
    …re all arrays entirely in memory and disable the hdf5 cache.
  2. add some includes and namespaces specifications to make compiler happ…

    glennhickey committed Apr 16, 2013
    …y in progressive cactus
  3. lower default maxblock

    glennhickey committed Apr 16, 2013
  4. fix option type

    glennhickey committed Apr 16, 2013