diff --git a/NEWS.md b/NEWS.md index bcd2b690..3bf2dc02 100644 --- a/NEWS.md +++ b/NEWS.md @@ -3,6 +3,7 @@ Resolve CRAN notes # SDMtune 1.1.5 Bug fixes: + * Allow fold partitions created with ENMeval >= 2.0 * Fix error generated when plotting response for categorical predictors using RF * Update maxnet to version 0.1.4 to solve issue in cran checks @@ -14,12 +15,14 @@ Bug fixes: Add the argument `factors` to the function `modelReport()` to allow p Include Java >=8 in system requirements # SDMtune 1.1.2 + * Removed deprecated function `get_tunable_args()`. * Removed deprecated argument "parallel" form functions. * Updated citation text # SDMtune 1.1.1 Main changes: + * New function `checkMaxentInstallation()` to check if Maxent is correctly configured. * The argument parallel is deprecated and not used anymore. This because it improved computation only for very large datasets and used the superseded package snow. * The function `get_tunable_args()` has been replaced by `getTunableArgs()` to be consistent with the camel case function naming. At the moment is still possible to use both functions but `get_tunable_args()` will be deprecated in the next release. @@ -29,19 +32,23 @@ Bug fix: `plotPA` function now works also with new version of `ggplot2`. # SDMtune 1.1.0 Main changes: + * The function `thinData` accept now a matrix or a dataframe with several columns, useful if the users has information related to the coordinates that doesn't want to lose with the thinning procedure. * The function `plotResponse` plots the response for the full range of presences and backgrounds/absences when only_presence is TRUE, only_presence is unused only to compute the provided function to the range of presence locations when marginal = TRUE Bug fix: + * Interactive plot of SDMtune objects are again displayed in the RStudio Viewer pane # SDMtune 1.0.1 Bug fixes: + * Fix CRAN errors * Fix bug introduced with version 1.0.0 # SDMtune 1.0.0 Main changes: + * In this release all deprecated functions and functions' arguments have been removed, including the functions to convert old objects (created with version < 0.2.0.) into the new format. * Add function `addSamplesToBg` to add presence locations to background location. * `extra_args` in Maxent models cannot be changed anymore. @@ -50,21 +57,24 @@ Bug fix: Fix CRAN error for r-oldrel # SDMtune 0.2.1 Main changes: + * New function to predict `SDMmodelCV` objects * Add the possibility to pass multiple methods to the `train` function * Add possibility to compute the testing AUC or TSS for a held apart testing dataset in the case of a `SDMmodelCV` object * Add the possibility to merge only the presence locations in the `mergeSWD` function Bug fixes: + * `plotPA` function now works also with large raster objects * Removed font family from plot functions to avoid errors when the font is not available # SDMtune 0.2.0 This release is the first step to enable more methods to train models. The main change is that the `SDW` object now bundles together the presence and the absence/background locations and is not necessary anymore to pass the presence and absence locations as separate arguments to the `train` function. -Old objects of class `SWD`, `SDMmodel`, `SDMmodelCV` and `SDMtune` created with version <= 0.1.1 must be converted into the new format using the dedicated help functions. Please check the article [Deprecated objects](https://consbiol-unibern.github.io/SDMtune/articles/articles/deprecated-objects.html) in the package website. +Old objects of class `SWD`, `SDMmodel`, `SDMmodelCV` and `SDMtune` created with version <= 0.1.1 must be converted into the new format using the dedicated help functions. Main changes: + * The `SWD` object bundles together the presence and absence/background locations * New methods to train models: Artificial Neural Network (ANN), Boosted Regression Trees (BRT) and Random Forest (RF) * Enabled spatial cross validation: the function `train` accepts now folds partition generated with other packages (i.e. ENMeval and blockCV) @@ -75,9 +85,11 @@ Main changes: Deprecated function: `getSubsample` # SDMtune 0.1.1 + * Fix bug in `VarImp` function for `SDMmodelCV` objects * Real-time charts are now displayed also when R is not executed from RStudio * `maxentVarImp` function available for `SDMmodelCV` objects # SDMtune 0.1.0 + * First release