obsBrain: Observatory of Brain
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Xiangzhen Kong Xiangzhen Kong
Xiangzhen Kong and Xiangzhen Kong add Gene Table for ENIGMA effects
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README.md add Gene Table for ENIGMA effects Dec 27, 2018
server.R add Gene Table for ENIGMA effects Dec 27, 2018
ui.R add Gene Table for ENIGMA effects Dec 27, 2018

README.md

obsBrain

Observatory of Brain

  • With this application, researchers could easily search and visualise regional effects in the human brain.
  • Data display is based on the Desikan–Killiany atlas (with 34 parcels in each hemisphere) from FreeSurfer, which has been widely used in multi-site collaborative project, e.g., ENIGMA.
  • Links: Scripts on Github obsBrain and application online obsBrain.
  • We would like to acknowledge to shiny, ggseg, and feather R packages.

Gene in Brain

ENIGMA in Brain

obsBrain Viewer

  • With this tab, researchers could easily visualise regional effects based on the Desikan–Killiany atlas.
  • Prepare file based on this input file template. Note that do NOT change the first two columns (i.e., 'area' and 'hemi'). Other useful files are provided Here.

Contact

  • If you have any questions about this application, please feel free to contact me (Xiangzhen Kong, MPI, Nijmegen) via Email xiangzhen.kong AT outlok.com or Twitter @xiangzhenkong or Github obsBrain.
  • Updated on Dec. 27, 2018.