El Tabbal et al. 2020 "Removal of the extracellular matrix biases auditory cortical layer dynamics towards supragranular frequency integration"

A read me file for the code and data to reproduce the analysis done in the above mentioned paper

Dowloading the data required to reproduce the figures:

For running the code you will need to download the following data from the following link https://cloud.lin-magdeburg.de/s/8Ee2nFETjq3ZaCb Within the folder, you will find the following data files:

• all_animals_BF_singlesink_hyase_10thFeb2020.mat
• ControlECMDATA.mat
• DataforGroupanalysisHYASE.mat
• EVOKEDPSD_10thFeb2020.mat
• SpontaneousECMDATA.mat
• SpontaneousPSD_10thFEB202.mat

The folder further contains the used code for n-way repeated measures ANOVAs within a zip-folder. After downloading all the files you need to download the MVGC_toolbox for granger causality (https://users.sussex.ac.uk/~lionelb/MVGC/html/mvgchelp.html) along with the Chronux toolbox for oscillation analysis (http://chronux.org/). The available data are the single-trial traces of the current-source density (CSD) calculated by the laminar local field potential (cf. Happel et al., 2010; J Neurosci). Raw recording files (plx and mat format) can be obtained by the authors by request.

Usage of the code and reproduction of figures:

the following functions will help reproduce their corresponding figures

1. Figure 2 and 3 can be reproduced using the function "Tabbal_et_al_CSD_group_Hyaseanalysis"
2. Figure 4 can be reproduced using the function "Tabbal_et_al_OscillationHyase_at_BF_function_chronux"
3. Figure 5 can be reproduced using the function "Tabbal_et_al_singletrial_granger"
4. Figure 6 can be reproduced using the function "Tabbal_et_al_CSD_Group_SpontAnalysis_function_00"
5. Figure Supplementary can be reproduced using the function "Tabbal_et_al_Control_CSD_group_analysis"