No description or website provided.
Perl Other
Pull request Compare This branch is 117 commits behind sanger-pathogens:master.
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Failed to load latest commit information.
bin
lib/Bio
t
.gitignore
README.md
dist.ini
software_license

README.md

Assembly Improvement

Take in an assembly in FASTA format, reads in FASTQ format, and optionally a reference and produce a better reference using Abacas/SSpace and GapFiller.

Scaffolding is performed using SSpace, and gap closing is performed using GapFiller. Both must be downloaded from http://www.baseclear.com [Optional] Contig Ordering is performed using Abacas, and requires nucmer and promer to be installed.