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da8c803 @andrewjpage Update documentation for CPAN
andrewjpage authored
1 NCBI Blast+
2 ============
3 Download and install NCBI Blast+ (min version 2.25)
4 ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/
5
6
7
8 Bio::MLST::Check
9 ===================
10
11 Using CPAN (recommended)
12 ----------
13 cpan Bio::MLST::Check
14
15 The old way (not recommended)
16 ----------
17 Download the tar.gz file from CPAN.
18 Unzip
19 cd Bio_MLST_check-xxxxx
20 perl Makefile.PL
21 make
22 make test
23 make install
24
25
26
27 Check it works
28 ==============
29 bash
30 export MLST_DATABASES=~/MLST_databases
31 download_mlst_databases
32 get_sequence_type -s "Streptococcus pneumoniae" example_assembly.fasta
33
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