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CyVerse Learning Institute - Foundational Open Science Skills (FOSS) 2019
Foundational Open Science Skills (FOSS) is a novel, camp-style training designed to prepare principal investigators and their lab teams, both new and established, to meet the growing expectations of funding agencies, publishers, and research institutions for scientific reproducibility and data accessibility.
Prior to the workshop, please visit the Before you arrive page.
There are no pre-requisites for FOSS, but the course will cover a lot of material in a short time. Participants who have limited computational experience should try to view the Software Carpentry Core Lessons before attending.
- Familiarity with productivity software for organizing your lab group, communications, and research
- How to scale out your computation from laptop to cloud and high performance computing (HPC) systems
- How to manage data for open science and reproducibility
.. toctree:: :maxdepth: 1 FOSS 2019 Home <self>
.. toctree:: :maxdepth: 1 :caption: Before you Arrive before/main before/installation before/about_cyverse
.. toctree:: :maxdepth: 1 :caption: Getting Started getting_started/intro getting_started/code_of_conduct getting_started/agenda getting_started/open_sci_lab getting_started/glossary
.. toctree:: :maxdepth: 1 :caption: Software Essentials software_essentials/linux software_essentials/version_control software_essentials/communication software_essentials/websites software_essentials/commandline software_essentials/R_Studio software_essentials/RStudio_Git software_essentials/continuous_integration
.. toctree:: :maxdepth: 1 :caption: CyVerse CyVerse/intro_to_cyverse CyVerse/de CyVerse/data_store CyVerse/vice CyVerse/atmo CyVerse/tool_integration_app_building_DE
.. toctree:: :maxdepth: 1 :caption: Data Management Data_management/overview Data_management/FAIR Data_management/dmp
.. toctree:: :maxdepth: 1 :caption: Moving On moving_on/xsede moving_on/cyberinfrastructure
.. toctree:: :maxdepth: 1 :caption: Containers Containers/dockeronatmo Containers/biocontainers Containers/dockerintro Containers/dockeradvanced
.. toctree:: :maxdepth: 1 :caption: Instructions and Reporting
- Amanda Cooksey
- Tina Lee
- Tyson Swetnam
- Ramona Walls
- Fernando Rios (UA Libraries)
- Michael Mandel (UA Eller College of Management)
CyVerse Vision: Transforming science through data-driven discovery.
CyVerse Mission: Design, deploy, and expand a national cyberinfrastructure for life sciences research and train scientists in its use.
CyVerse provides life scientists with powerful computational infrastructure to handle huge datasets and complex analyses, thus enabling data-driven discovery. Our powerful extensible platforms provide data storage, bioinformatics tools, image analyses, cloud services, APIs, and more.
While originally created with the name iPlant Collaborative to serve U.S. plant science communities, CyVerse cyberinfrastructure is germane to all life sciences disciplines and works equally well on data from plants, animals, or microbes. By democratizing access to supercomputing capabilities, we provide a crucial resource to enable scientists to find solutions for the future.
CyVerse Homepage: http://www.cyverse.org
Funding and Citations
CyVerse is funded by the National Science Foundation under Award Numbers DBI-0735191, DBI-1265383, and DBI-1743442.
Please cite CyVerse appropriately when you make use of our resources, CyVerse citation policy
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