• Kinetic DNA strand displacement analyzer

    Python 1 1 Updated Aug 8, 2018
  • Multistrand nucleic acid kinetic simulator

    Python 5 4 Updated Aug 8, 2018
  • A package for designing and working with algorithmic DNA tile systems.

    Python 1 Updated Jul 2, 2018
  • base classes for nucleic acid strand displacement programming

    Python MIT Updated Jun 29, 2018
  • A package for designing short orthogonal and isoenergetic DNA sequences, intended for DNA tile sticky ends and often used for toeholds.

    Python 1 3 Updated May 18, 2018
  • domain-level nucleic acid reaction enumeration

    Python 1 Updated May 16, 2018
  • Nucleic acid strand displacement compiler

    Python 1 Updated May 15, 2018
  • Simulator package for algorithmic tile self-assembly models aTAM and kTAM, as a python package.

    C 1 Updated Apr 17, 2018
  • Piperine compiles abstract CRNs into DNA sequences and estimates how much the generated DNA implementations may participate in undesired DNA-DNA interactions during experiments.

    Python 4 3 MIT Updated Dec 19, 2017
  • A compiler for DNA circuits and tile systems.

    Python 3 MIT Updated Dec 18, 2017
  • A framework with a reduced state space to train the Arrhenius DNA kinetic model

    Python 2 3 Updated Dec 13, 2017