• A package for designing short orthogonal and isoenergetic DNA sequences, intended for DNA tile sticky ends and often used for toeholds.

    Python 1 Updated Oct 23, 2017
  • Multistrand nucleic acid kinetic simulator

    Python 1 2 Updated Oct 22, 2017
  • Piperine compiles abstract CRNs into DNA sequences and estimates how much the generated DNA implementations may participate in undesired DNA-DNA interactions during experiments.

    Python 2 3 MIT Updated Oct 13, 2017
  • A package for designing and working with algorithmic DNA tile systems.

    Python 1 Updated Sep 28, 2017
  • A framework with a reduced state space to train the Arrhenius DNA kinetic model

    Python 2 Updated Sep 28, 2017
  • base classes for nucleic acid strand displacement programming

    Python MIT Updated Sep 26, 2017
  • domain-level nucleic acid reaction enumeration

    Python 1 Updated Sep 26, 2017
  • Nucleic acid strand displacement compiler

    Python 1 MIT Updated Sep 25, 2017
  • A compiler for DNA circuits and tile systems.

    Python 1 MIT Updated Sep 2, 2017
  • Simulator package for algorithmic tile self-assembly models aTAM and kTAM, as a python package.

    C 1 Updated Sep 2, 2017