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@DNA-and-Natural-Algorithms-Group

DNA and Natural Algorithms Group

Popular repositories

  1. piperine piperine Public

    Piperine compiles abstract CRNs into DNA sequences and estimates how much the generated DNA implementations may participate in undesired DNA-DNA interactions during experiments.

    Python 22 6

  2. multistrand multistrand Public

    Multistrand nucleic acid kinetic simulator

    C++ 17 10

  3. peppercornenumerator peppercornenumerator Public

    domain-level nucleic acid reaction enumeration

    Python 10 6

  4. nuskell nuskell Public

    Nucleic acid strand displacement compiler

    Python 8 3

  5. KinDA KinDA Public

    Kinetic DNA strand displacement analyzer

    Python 8 5

  6. SST-sequence-designer SST-sequence-designer Public

    Sequence designer for single-stranded DNA tiles

    Python 6 4

Repositories

Showing 10 of 16 repositories
  • xgrow Public

    Simulator package for algorithmic tile self-assembly models aTAM and kTAM, as a python package.

    DNA-and-Natural-Algorithms-Group/xgrow’s past year of commit activity
    C 3 4 2 0 Updated May 8, 2024
  • multistrand Public

    Multistrand nucleic acid kinetic simulator

    DNA-and-Natural-Algorithms-Group/multistrand’s past year of commit activity
    C++ 17 10 0 1 Updated Apr 30, 2024
  • KinDA Public

    Kinetic DNA strand displacement analyzer

    DNA-and-Natural-Algorithms-Group/KinDA’s past year of commit activity
    Python 8 5 0 1 Updated Apr 29, 2024
  • alhambra Public

    A package for designing and working with algorithmic DNA tile systems.

    DNA-and-Natural-Algorithms-Group/alhambra’s past year of commit activity
    Python 0 3 4 4 Updated Feb 12, 2024
  • stickydesign Public

    A package for designing short orthogonal and isoenergetic DNA sequences, intended for DNA tile sticky ends and often used for toeholds.

    DNA-and-Natural-Algorithms-Group/stickydesign’s past year of commit activity
    Python 2 3 1 0 Updated Jan 5, 2024
  • peppercompiler Public

    A compiler for DNA circuits and tile systems.

    DNA-and-Natural-Algorithms-Group/peppercompiler’s past year of commit activity
    Python 3 MIT 3 0 1 Updated Dec 13, 2023
  • piperine Public

    Piperine compiles abstract CRNs into DNA sequences and estimates how much the generated DNA implementations may participate in undesired DNA-DNA interactions during experiments.

    DNA-and-Natural-Algorithms-Group/piperine’s past year of commit activity
    Python 22 MIT 6 1 1 Updated Dec 13, 2023
  • SST-sequence-designer Public

    Sequence designer for single-stranded DNA tiles

    DNA-and-Natural-Algorithms-Group/SST-sequence-designer’s past year of commit activity
    Python 6 4 2 0 Updated Oct 26, 2023
  • peppercornenumerator Public

    domain-level nucleic acid reaction enumeration

    DNA-and-Natural-Algorithms-Group/peppercornenumerator’s past year of commit activity
    Python 10 MIT 6 0 0 Updated Aug 23, 2023
  • nuskell Public

    Nucleic acid strand displacement compiler

    DNA-and-Natural-Algorithms-Group/nuskell’s past year of commit activity
    Python 8 MIT 3 0 1 Updated Jul 25, 2023

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