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Kinetic DNA strand displacement analyzer
Multistrand nucleic acid kinetic simulator
A package for designing and working with algorithmic DNA tile systems.
base classes for nucleic acid strand displacement programming
A package for designing short orthogonal and isoenergetic DNA sequences, intended for DNA tile sticky ends and often used for toeholds.
domain-level nucleic acid reaction enumeration
Nucleic acid strand displacement compiler
Simulator package for algorithmic tile self-assembly models aTAM and kTAM, as a python package.
Piperine compiles abstract CRNs into DNA sequences and estimates how much the generated DNA implementations may participate in undesired DNA-DNA interactions during experiments.
A compiler for DNA circuits and tile systems.
A framework with a reduced state space to train the Arrhenius DNA kinetic model