Tools test whether admixture occurred and more
This project is a collection of tools for bioinformatic processing of ancient DNA data at the Harvard Medical School Reich Lab.
Workflow for processing Illumina sequencing runs for ancient human DNA
Eigen tools by Nick Patterson and Alkes Price lab
Tools for accessing SGDP lite data
Processing WGS aDNA data using the ReichLab protocol
Compute postmortem damage patterns and decontaminate ancient genomes
by Mark Lipson
XP-CLR (Chen et al. 2010) uses allele frequency differentiation at linked loci to detect selective sweeps.
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