David Reich Lab

Repositories

• AdmixTools

  Tools test whether admixture occurred and more
  C 47 113 33 3 Updated Feb 23, 2021

• ADNA-Tools

  This project is a collection of tools for bioinformatic processing of ancient DNA data at the Harvard Medical School Reich Lab.
  Java 0 8 2 0 Updated Dec 21, 2020

• adna-workflow

  Workflow for processing Illumina sequencing runs for ancient human DNA
  Python 1 6 2 0 Updated Oct 29, 2020

• EIG

  Eigen tools by Nick Patterson and Alkes Price lab
  C 45 114 31 0 Updated Jun 18, 2019

• cTools

  Tools for accessing SGDP lite data
  C 5 5 0 0 Updated Jun 6, 2019

• adna

  Processing WGS aDNA data using the ReichLab protocol
  C 3 11 1 1 Updated Mar 8, 2019

• PMDtools

  Forked from pontussk/PMDtools

  Compute postmortem damage patterns and decontaminate ancient genomes
  Python GPL-3.0 5 0 0 0 Updated Mar 7, 2018

• MutationRateCode

  by Mark Lipson
  MATLAB 0 3 0 0 Updated Aug 20, 2015

• XP-CLR

  XP-CLR (Chen et al. 2010) uses allele frequency differentiation at linked loci to detect selective sweeps.
  0 0 1 0 Updated Mar 16, 2015