diff --git a/pathml/preprocessing/workflows.py b/pathml/preprocessing/workflows.py index 4faeeb4c..e69cb6ba 100644 --- a/pathml/preprocessing/workflows.py +++ b/pathml/preprocessing/workflows.py @@ -20,7 +20,7 @@ def run_vectra_workflow( use_parallel=True, n_cpus=10, tile_size=(1920, 1440), - save_slidedata_file="data/dataset_processed.h5", + save_slidedata_file="./data/dataset_processed.h5", save_anndata_file="./data/adata_combined.h5ad", ):