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CHANGES IN VERSION 1.2.0
------------------------
NEW FEATURES
o Add support for iterative REDUCE in .bpiterate_serial()
o Refactor BiocParallelParam class:
- add 'log', 'tasks', 'threshold', 'logdir', 'resultdir' fields
- 'tasks' is used by SnowParam and MulticoreParam only
o MulticoreParam now uses SnowParam(..., type=FORK)
o Add bpvalidate()
MODIFICATIONS
o Add check to bipiterate() for Windows
o Invoke REDUCE without '...' in .bpiterate_serial()
o Update README and bpvec() man page
o Change default BPPARAM to SnowParam() for Windows
o Update bpiterate() man pages for Windows
o Add note to vignette re: module load in template file
from Thomas Girke
o SnowParam:
- bpmapply() now dispatches to bplapply()
- remove BPRESUME
- logging, gc ouput on worker
- write results or logs to file
- new error handling with futile.logger
o Lighten the NAMESPACE by importing only parallel, snow
o Modify which params are registered at load time:
- Windows: SnowParam(), SerialParam()
- Non-Windows: MulticoreParam(), SnowParam(), SerialParam()
o bpvalidate() looks for symbols in 'fun' environment, NAMESPACE
of loaded libraries, and the search path
BUG FIXES
o Bug fix in bpiterate_multicore(); update doc examples
o Bug fix in bpiterate() in ordering results from Martin
o Bug fix in .bpiterate_serial() when REDUCE is given
CHANGES IN VERSION 1.0.0
------------------------
NEW FEATURES
o Add vignette sections for cluster managers, AMI
o Add bpiterate generic and methods
o Add REDUCE to bpiterate()
o Add 'reduce.in.order' to bpiterate()
MODIFICATIONS
o Update vignette examples, reorganize sections
o Allow 'workers' in BiocParallelParam to be character or integer
o Enhance bpresume() man page; add examples
o Enhance register() man page; add examples
o Improve default registration for SnowParam:
- max 8 cores
- use detectcores() / mc.cores if available
o Modify .convertToSimpleError() to convert NULL to NA_character_
BUG FIXES
o Fix recursion problem for BPPARAM as list
o Modify bpaggregate() to run in parallel