Pathway-based sparse deep neural network for survival analysis
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README.md

Cox-PASNet

Cox-PASNet is a pathway-based sparse deep neural network for survival analysis.

Get Started

Example Datasets

To get started, you need to download example datasets from URLs as below:

Train data

Validation data

Test data

Pathway Mask data

Entire data

Training, Validation and Evaluation of Cox-PASNet

Run.py: to train the model with the inputs from train.csv. Hyperparmeters are optimized by grid search automatically with validation.csv. C-index is used to evaluate the model performance with test.csv.

Interpretation

Run_for_Interpret.py: to interpret the model with entire_data.csv.