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seqtools

Installation

seqtools is currently not on CRAN, but you can get it from github with:

# install.packages("devtools")
devtools::install_github("DavisBrian/seqtools")

Examples

The following example uses seqtools to solve a fairly realistic problem: With phenotype, genotype, and a snpinfo file for each "gene", run a T5 test.

[TBD]

Philosophy

The goal is to provide a robust set of tools to interface with various GWAS testing methods and elimnate (or at least catch early) common mistakes.

Phenotype

Genotype

SnpInfo

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