From 5aa410bb4d776eb79a3dd87e0241c918101200ef Mon Sep 17 00:00:00 2001
From: Benjamin Midtvedt <benmid@student.chalmers.se>
Date: Thu, 6 Oct 2022 11:31:43 +0200
Subject: [PATCH 1/3] Add tensorflow datasets to the list of dependencies.

---
 setup.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/setup.py b/setup.py
index 6f54ac41a..19af6f923 100644
--- a/setup.py
+++ b/setup.py
@@ -8,6 +8,7 @@
 required = [
     "tensorflow",
     "tensorflow-probability",
+    "tensorflow_datasets",
     "numpy",
     "scipy",
     "pint",
@@ -28,7 +29,7 @@
 
 setuptools.setup(
     name="deeptrack",  # Replace with your own username
-    version="1.4.0a8",
+    version="1.4.1",
     author="Benjamin Midtvedt",
     author_email="benjamin.midtvedt@physics.gu.se",
     description="A deep learning oriented microscopy image simulation package",

From bfb0e03d6c4b2d230c26fa525de7b78df2ac3da1 Mon Sep 17 00:00:00 2001
From: Benjamin Midtvedt <benmid@student.chalmers.se>
Date: Thu, 6 Oct 2022 11:37:21 +0200
Subject: [PATCH 2/3] Read requirements.txt into setup.py

---
 setup.py | 19 ++++---------------
 1 file changed, 4 insertions(+), 15 deletions(-)

diff --git a/setup.py b/setup.py
index 19af6f923..dbba4caa9 100644
--- a/setup.py
+++ b/setup.py
@@ -1,27 +1,16 @@
 import setuptools
-import subprocess
 import pkg_resources
 
 with open("README.md", "r") as fh:
     long_description = fh.read()
 
-required = [
-    "tensorflow",
-    "tensorflow-probability",
-    "tensorflow_datasets",
-    "numpy",
-    "scipy",
-    "pint",
-    "pandas",
-    "tqdm",
-    "scikit-image>=0.18.0",
-    "pydeepimagej",
-    "more_itertools",
-]
+with open("requirements.txt", "r") as fh:
+    required = fh.read().splitlines()
+
 
 installed = [pkg.key for pkg in pkg_resources.working_set]
 if (
-    not "tensorflow" in installed
+    "tensorflow" not in installed
     or pkg_resources.working_set.by_key["tensorflow"].version[0] == "2"
 ):
     required.append("tensorflow_addons")

From ecc509fcfceec80b2fcf51691d8e902d568f8e03 Mon Sep 17 00:00:00 2001
From: Benjamin Midtvedt <benmid@student.chalmers.se>
Date: Thu, 6 Oct 2022 11:39:47 +0200
Subject: [PATCH 3/3] remove sphinx from build

---
 setup.py | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/setup.py b/setup.py
index dbba4caa9..5c4a665f5 100644
--- a/setup.py
+++ b/setup.py
@@ -7,6 +7,10 @@
 with open("requirements.txt", "r") as fh:
     required = fh.read().splitlines()
 
+# Remove sphinx from requirements
+required = [x for x in required if not x.startswith("Sphinx")]
+required = [x for x in required if not x.startswith("pydata-sphinx-theme")]
+
 
 installed = [pkg.key for pkg in pkg_resources.working_set]
 if (