index.md

Panpipes Tutorials

This website contains tutorials to exemplify running Panpipes.

For installation please check the documentation

List of tutorials

:maxdepth: 1

ingesting_data/Ingesting_data_with_panpipes.md
ingesting_multiome/ingesting_mome.md
ingesting_multimodal_data/ingesting_multimodal_data.md
ingesting_mouse/Ingesting_mouse_data_with_panpipes.md
filtering_data/filtering_data_with_panpipes.md
uni_multi_integration/Integrating_data_with_panpipes.md
clustering/clustering_tutorial.md
visualization/vis_with_panpipes.md
refmap_pancreas/Reference_mapping.md

ingesting_visium_data/Ingesting_visium_data_with_panpipes.md
ingesting_merfish_data/Ingesting_merfish_data_with_panpipes.md
preprocess_spatial_data/preprocess_spatial_data_with_panpipes.md
deconvolution/deconvoluting_spatial_data_with_panpipes.md