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OMAmer - tree-driven and alignment-free protein assignment to sub-families
Widget to visualise the evolutionary history of gene families
coronavirus coevolution analysis
a short tutorial on using OMA orthology and HOG data to characterize a conserved pathway
PyOMADB is a python client to the OMA browser, using the REST API.
Phylogenetic profiling with orthology data
files and notebook related to pad1 analysis
A tutorial on using OMA Browser and OMA Standalone for phylogenetic species trees reconstruction. Scripts referred to in the tutorial paper can be found here.
ALF artificial life simulator
A package to compute the Robinson Fould distance extended to labeled topologies.
OMA standalone repository
A complementary analysis to "Identifying Orthologs with OMA: A Primer" in which we show how to compare sub-types of orthologs (pairwise vs. HOG vs. OMA Group)
A tool to infer Hierarchical Orthologous Groups (HOGs) from pairwise orthologs
Electronic exercises (with solutions) to accompany the book chapter "A Gene Ontology Tutorial in Python" by Alex Warwick Vesztrocy and Christophe Dessimoz, in the collection The Gene Ontology Handbook, C Dessimoz and N Skunca Eds, Spring Humana.
Phylo.IO JS tree viewer
Phylogenetic clustering package
A fast implementation of optimal pairwise alignments with python