Digital Slide Archive

Repositories

• digital_slide_archive

  The official deployment of the Digital Slide Archive and HistomicsTK.

  histology bioimage-informatics digital-slide-archive histomicstk
  Python 15 26 12 0 Updated Jan 18, 2021

• HistomicsTK

  A Python toolkit for pathology image analysis algorithms.

  python machine-learning computer-vision histology medical-image-processing bioimage-informatics digital-slide-archive
  Python Apache-2.0 69 177 21 0 Updated Jan 11, 2021

• HistomicsUI

  A Girder plugin for pathology image annotations and analysis.

  python histology digital-slide-archive bioimage-infomatics
  JavaScript 3 4 37 2 Updated Jan 11, 2021

• CNNCellDetection

  This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei in histology images
  Python Apache-2.0 3 18 0 7 Updated Jan 7, 2021

• tifftools

  Pure Python tools for reading and writing all TIFF IFDs, sub-IFDs, and tags.
  Python 0 7 1 0 Updated Dec 21, 2020

• HTAN
  Python 0 0 1 0 Updated Dec 18, 2020

• DSA-WSI-DeID

  A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.

  hacktoberfest
  Python 0 3 8 0 Updated Dec 15, 2020

• tensorflow_reader

  A whole-slide image reader for TensorFlow
  Jupyter Notebook 1 1 5 0 Updated Dec 3, 2020

• digitalslidearchive.info

  Documentation for installing and maintaining the Digital Slide Archive, Girder, and HistomicsTK
  Jupyter Notebook 0 6 2 0 Updated Jul 8, 2020

• DigitalSlideArchive.github.io

  This is a redirect to the main documentation
  HTML 0 0 0 0 Updated Mar 11, 2020

• base_docker_image

  This a repository for generating the docker image to be used as a base image by the docker image of HistomicsTK
  Python 2 0 0 0 Updated Dec 30, 2019

• dsa_girder_webix_base_viewer

  This is a Webix Based Viewing application template for the DSA that uses Girder API
  Jupyter Notebook 1 2 4 0 Updated Oct 8, 2019

• pylibtiff

  Forked from pearu/pylibtiff

  Automatically exported from code.google.com/p/pylibtiff
  Python 42 0 0 1 Updated Aug 14, 2018

• ansible-role-vips

  Ansible role to install VIPS image processing software
  Apache-2.0 0 2 3 0 Updated Sep 14, 2017

• ctk-cli

  Forked from cdeepakroy/ctk-cli

  Python interface for inspecting and running CLI modules (as defined by CommonTK)
  Python Apache-2.0 7 0 0 0 Updated Mar 8, 2017

• DSA_Documentation

  Documentation for DSA for ReadTheDocs
  0 0 0 0 Updated Feb 21, 2017