Invalid links for the pre-scanned motif files

[jcbusch]

Would it be possible to fix the links for the the pre-scanned motif files? Or at least include more details about the file format? I'm currently running FIMO to make my own but I want to make sure it's creating the correct file type/format before using.

[ignaciot]

Thanks for bringing that up, I was not aware that the pre-processed motif storage link was no longer functional. While I check that out, the motif files have a .bed extension and consist of simply 3 TAB-separated columns:

CHROMOSOME <TAB> Start position <TAB> End position

[lynn-sanford]

These files are no longer hosted through the Dowell lab website. I instead uploaded them to Zenodo (https://doi.org/10.5281/zenodo.8432115) and updated the link in the README accordingly. Let me know if you have any other issues accessing them!