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Data Structure Reference

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Erik A. Roberts edited this page Aug 1, 2018 · 7 revisions
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  • data
    • data.labels — cell string list of variable fields in data
    • data.time — time vector of simulation
    • data.('state_variable_name') — matrix of each state variable
    • data.('varied_variable_name') — scalar/vector of each varied variable containing values used in this sim
    • data.varied — cell string list of varied variable names (also are fields in data)
    • data.stimulator_options — the options used in dsSimulate call
    • data.model
      • data.model.parameters — also found in parameters.mat
      • data.model.fixed_variables
      • data.model.functions
      • data.model.monitors
      • data.model.state_variables
      • data.model.ODEs — structure of ordinary differential equations
      • data.model.ICs — structure of initial conditions
      • data.model.conditionals — conditional if statements, e.g. spike monitoring
      • data.model.linker
      • data.model.comments
      • data.model.namespaces
      • data.model.specification — spec structure, similar to that which can be passed into dsSimulate
        • data.model.specification.populations
          • data.model.specification.populations.name
          • data.model.specification.populations.size
          • data.model.specification.populations.equations
          • data.model.specification.populations.mechanism_list
          • data.model.specification.populations.mechanisms
          • data.model.specification.populations.parameters
          • data.model.specification.populations.conditionals
          • data.model.specification.populations.monitors
          • data.model.specification.populations.model
        • data.model.specification.connections
        • data.model.specification.mechanisms

Inspired by feedback from Matt Ning