---------------------------------------------------------------
| Key               | Values                                  |
---------------------------------------------------------------
| speciesTree       | species-tree.nwk                        |
| orthologyGroups   | orthologyGroups/orthologyGroups.%s.list |
| IN.genesFiles     | genes/genes.%s.list                     |
| OUT.ancGenesFiles | ancGenes/all/ancGenes.%s.list.bz2       |
| OUT.genesFiles    | genes/genes.%s.list.bz2                 |
---------------------------------------------------------------
Renaming the genes of CF_000017685.1 ... Traceback (most recent call last):
  File "/home/theillere/Agora/src/ALL.reformatGeneFamilies.py", line 62, in <module>
    assert oldName not in seen
AssertionError