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class: Workflow
cwlVersion: v1.0
requirements:
MultipleInputFeatureRequirement: {}
MultipleInputFeatureRequirement: {}
inputs:
contigs:
type: File
reads:
type: File[]
outputs:
refined_bins:
type: File[]
outputSource: bin_refinement/bins
steps:
metawrap_binning:
in:
contigs: contigs
reads: reads
out:
- concoct_bins
- metabat2_bins
- maxbin2_bins
run: ../tools/metawrap_binning.cwl
bin_refinement:
in:
concoct_bin_dir: metawrap_binning/concoct_bins
metabat_bin_dir: metawrap_binning/metabat2_bins
maxbin_bin_dir: metawrap_binning/maxbin2_bins
out:
- bins
run: ../tools/metawrap_bin_refinement.cwl
$namespaces:
edam: http://edamontology.org/
iana: https://www.iana.org/assignments/media-types/
s: http://schema.org/
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